RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 GMEB2Q9UKD1 530 aa7.43□□□□□ -1.22
HDAC3-209ENST00000486618 USP18Q9UMW8 372 aa7.43□□□□□ -1.22
HDAC3-209ENST00000486618 NUMBLQ9Y6R0 609 aa7.43□□□□□ -1.22
HDAC3-209ENST00000486618 RALGAPA1Q6GYQ0 2036 aa7.43□□□□□ -1.22
HDAC3-209ENST00000486618 IGKV6-21A0A0C4DH24 114 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 CCDC196A0A1B0GTZ2 297 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 FAM170BA6NMN3 283 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 SLC27A2O14975 620 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 CHMP2AO43633 222 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 B4GALT3O60512 393 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 ICMTO60725 284 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 MAFO75444 373 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 IPO7O95373 1038 aaKnown RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 POMCP01189 267 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 ADRB1P08588 477 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 SPATA31D3P0C874 917 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 MYBP10242 640 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 ITGA4P13612 1032 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 HOXC13P31276 330 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 DDIT3P35638 169 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 GPC5P78333 572 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 ZBED6P86452 979 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 ATP11AP98196 1134 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 DSG1Q02413 1049 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 HYAL2Q12891 473 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 DRP2Q13474 957 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 SNW1Q13573 536 aaKnown RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 UBXN2BQ14CS0 331 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 MLF2Q15773 248 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 PFKFB3Q16875 520 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 USP41Q3LFD5 358 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 SLC44A4Q53GD3 710 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 ZBTB41Q5SVQ8 909 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 LRCH2Q5VUJ6 765 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 CFAP161Q6P656 301 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 IGF2-ASQ6U949 168 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 SPATA31D4Q6ZUB0 917 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 MIER3Q7Z3K6 550 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 SRGAP1Q7Z6B7 1085 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 C14orf80Q86SX3 495 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 ANKRD42Q8N9B4 389 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 ZBTB44Q8NCP5 570 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 BICD2Q8TD16 824 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 NLRP4Q96MN2 994 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 DDX23Q9BUQ8 820 aaKnown RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 SSBP4Q9BWG4 385 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 ZMYND12Q9H0C1 365 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 EPC1Q9H2F5 836 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 AGPAT5Q9NUQ2 364 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 COMMD8Q9NX08 183 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 LUZP4Q9P127 313 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 FNIP2Q9P278 1114 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 TAGLN3Q9UI15 199 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 CDH7Q9ULB5 785 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 RAB23Q9ULC3 237 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 RABL2BQ9UNT1 228 aa7.42□□□□□ -1.22
HDAC3-209ENST00000486618 SMG5Q9UPR3 1016 aaKnown RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 MRPS17Q9Y2R5 130 aaKnown RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 PRG3Q9Y2Y8 225 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 TDRD15B5MCY1 1934 aaKnown RBP7.42□□□□□ -1.22
HDAC3-209ENST00000486618 GOLGA8AA7E2F4 631 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 GOLGA8BA8MQT2 603 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 TMEM110-MUSTN1A8MSY1 372 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 MSH4O15457 936 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 TGM5O43548 720 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 DKC1O60832 514 aaKnown RBP eCLIP7.41□□□□□ -1.22
HDAC3-209ENST00000486618 LRRN2O75325 713 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 P4HBP07237 508 aaKnown RBP7.41□□□□□ -1.22
HDAC3-209ENST00000486618 HNRNPA1P09651 372 aaKnown RBP eCLIP7.41□□□□□ -1.22
HDAC3-209ENST00000486618 IDEP14735 1019 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 ABCD1P33897 745 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 USP11P51784 963 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 RCAN1P53805 252 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 NCBP1Q09161 790 aaKnown RBP7.41□□□□□ -1.22
HDAC3-209ENST00000486618 PPP2R5DQ14738 602 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 UGCGQ16739 394 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 XP32Q5T750 250 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 CREB3L3Q68CJ9 461 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 ALKBH2Q6NS38 261 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 ERAP2Q6P179 960 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 LILRA6Q6PI73 481 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 MMS22LQ6ZRQ5 1243 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 TAS1R1Q7RTX1 841 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 RASSF3Q86WH2 238 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 COLGALT2Q8IYK4 626 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 HACE1Q8IYU2 909 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 RNF168Q8IYW5 571 aaPredicted RBP7.41□□□□□ -1.22
HDAC3-209ENST00000486618 ZFPM2Q8WW38 1151 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 WFDC12Q8WWY7 111 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 SLC7A3Q8WY07 619 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 EDEM1Q92611 657 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 N4BP2L2Q92802 583 aaPredicted RBP7.41□□□□□ -1.22
HDAC3-209ENST00000486618 SLC5A5Q92911 643 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 TBC1D20Q96BZ9 403 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 TRIM6Q9C030 488 aaPredicted RBP7.41□□□□□ -1.22
HDAC3-209ENST00000486618 CSRNP2Q9H175 543 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 UNC45AQ9H3U1 944 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 LTB4R2Q9NPC1 389 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 CHST7Q9NS84 486 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 MARCH5Q9NX47 278 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms