RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 FGF13Q92913 245 aa16.93■□□□□ 0.3
UPF3A-208ENST00000484246 NXPE3Q969Y0 559 aa16.93■□□□□ 0.3
UPF3A-208ENST00000484246 CORO1BQ9BR76 489 aa16.93■□□□□ 0.3
UPF3A-208ENST00000484246 GDE1Q9NZC3 331 aa16.93■□□□□ 0.3
UPF3A-208ENST00000484246 MAGEC2Q9UBF1 373 aaPredicted RBP16.93■□□□□ 0.3
UPF3A-208ENST00000484246 MRPS23Q9Y3D9 190 aaKnown RBP16.93■□□□□ 0.3
UPF3A-208ENST00000484246 C2orf16Q68DN1 1984 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 GTPBP10A4D1E9 387 aaKnown RBP16.92■□□□□ 0.3
UPF3A-208ENST00000484246 ANHXE9PGG2 379 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 MOSPD3O75425 235 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 SOAT2O75908 522 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 NOL4O94818 638 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 CLSTN1O94985 981 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 LAMP2P13473 410 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 TBXAS1P24557 533 aaPredicted RBP16.92■□□□□ 0.3
UPF3A-208ENST00000484246 CYP2F1P24903 491 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 CCR2P41597 374 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 CUL2Q13617 745 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 TPD52L1Q16890 204 aaPredicted RBP16.92■□□□□ 0.3
UPF3A-208ENST00000484246 CYP4A22Q5TCH4 519 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 WHAMMQ8TF30 809 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 TRMT2BQ96GJ1 504 aaKnown RBP16.92■□□□□ 0.3
UPF3A-208ENST00000484246 SPATA17Q96L03 361 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 C8orf48Q96LL4 319 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 MYRFLQ96LU7 910 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 NT5C1AQ9BXI3 368 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 IGSF9Q9P2J2 1179 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 HMGXB4Q9UGU5 601 aa16.92■□□□□ 0.3
UPF3A-208ENST00000484246 TRIM66O15016 1216 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 DCXO43602 365 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 CSH1P0DML2 217 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 CSH2P0DML3 217 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 HMGA1P17096 107 aaKnown RBP16.91■□□□□ 0.3
UPF3A-208ENST00000484246 SP100P23497 879 aaPredicted RBP16.91■□□□□ 0.3
UPF3A-208ENST00000484246 GBP2P32456 591 aaPredicted RBP16.91■□□□□ 0.3
UPF3A-208ENST00000484246 MAN2A1Q16706 1144 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 PTPN21Q16825 1174 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 CAVIN1Q6NZI2 390 aaKnown RBP16.91■□□□□ 0.3
UPF3A-208ENST00000484246 HS6ST3Q8IZP7 471 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 UBR7Q8N806 425 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 TATDN2Q93075 761 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 NT5C1BQ96P26 610 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 TWNKQ96RR1 684 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 LPIN3Q9BQK8 851 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 B3GNT5Q9BYG0 378 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 DNAI2Q9GZS0 605 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 IL21Q9HBE4 155 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 CISHQ9NSE2 258 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 NFE2L3Q9Y4A8 694 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 ATP8B3O60423 1300 aa16.91■□□□□ 0.3
UPF3A-208ENST00000484246 PI4K2BG5E9Z4 385 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 ALADP13716 330 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 CEBPBP17676 345 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 TRIM21P19474 475 aaKnown RBP16.9■□□□□ 0.3
UPF3A-208ENST00000484246 BDNFP23560 247 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 EEF1GP26641 437 aaKnown RBP16.9■□□□□ 0.3
UPF3A-208ENST00000484246 YWHAEP62258 255 aaKnown RBP16.9■□□□□ 0.3
UPF3A-208ENST00000484246 CYP27A1Q02318 531 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 GCNT1Q02742 428 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 TYRO3Q06418 890 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 HTR4Q13639 388 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 CDKAL1Q5VV42 579 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 C11orf57Q6ZUT1 292 aaPredicted RBP16.9■□□□□ 0.3
UPF3A-208ENST00000484246 PAQR9Q6ZVX9 377 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 ACOT1Q86TX2 421 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 FAM35AQ86V20 835 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 FUKQ8N0W3 1084 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 SHKBP1Q8TBC3 707 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 KHSRPQ92945 711 aaKnown RBP eCLIP16.9■□□□□ 0.39e-6■□□□□ 8.8
UPF3A-208ENST00000484246 TCEAL4Q96EI5 215 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 ARID3AQ99856 593 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 ZNF518BQ9C0D4 1074 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 GPR88Q9GZN0 384 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 ZNF334Q9HCZ1 680 aaPredicted RBP16.9■□□□□ 0.3
UPF3A-208ENST00000484246 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.9■□□□□ 0.3
UPF3A-208ENST00000484246 ZMYM5Q9UJ78 669 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 SORCS3Q9UPU3 1222 aa16.9■□□□□ 0.3
UPF3A-208ENST00000484246 TCF20Q9UGU0 1960 aaKnown RBP16.89■□□□□ 0.3
UPF3A-208ENST00000484246 SOBPA7XYQ1 873 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 NRG2O14511 850 aaPredicted RBP16.89■□□□□ 0.29
UPF3A-208ENST00000484246 CDC25CP30307 473 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 GPR15P49685 360 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 DDR2Q16832 855 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 GAREM2Q75VX8 874 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 MTSS1LQ765P7 747 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 EHBP1Q8NDI1 1231 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 FAM200AQ8TCP9 573 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 JAKMIP2Q96AA8 810 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 SMARCD1Q96GM5 515 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 HNRNPABQ99729 332 aaKnown RBP16.89■□□□□ 0.29
UPF3A-208ENST00000484246 TTLL2Q9BWV7 592 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 INTS2Q9H0H0 1204 aaKnown RBP16.89■□□□□ 0.29
UPF3A-208ENST00000484246 TMEM30AQ9NV96 361 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 EHD2Q9NZN4 543 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 UXTQ9UBK9 157 aaPredicted RBP16.89■□□□□ 0.29
UPF3A-208ENST00000484246 LIMD1Q9UGP4 676 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 MUTYHQ9UIF7 546 aa16.89■□□□□ 0.29
UPF3A-208ENST00000484246 NCOR1O75376 2440 aa16.88■□□□□ 0.29
UPF3A-208ENST00000484246 SLC38A8A6NNN8 435 aa16.88■□□□□ 0.29
UPF3A-208ENST00000484246 LETM1O95202 739 aaPredicted RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms