RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 CTNNA2P26232 953 aa15.26■□□□□ 0.03
CHD3-211ENST00000481999 RFC1P35251 1148 aaPredicted RBP15.26■□□□□ 0.03
CHD3-211ENST00000481999 SOX4Q06945 474 aaPredicted RBP15.26■□□□□ 0.03
CHD3-211ENST00000481999 C1QBPQ07021 282 aaKnown RBP15.26■□□□□ 0.03
CHD3-211ENST00000481999 SMTNL2Q2TAL5 461 aa15.26■□□□□ 0.03
CHD3-211ENST00000481999 TRIM72Q6ZMU5 477 aa15.26■□□□□ 0.03
CHD3-211ENST00000481999 ERICH1Q86X53 443 aa15.26■□□□□ 0.03
CHD3-211ENST00000481999 TMEM35BQ8NCS4 154 aa15.26■□□□□ 0.03
CHD3-211ENST00000481999 PCYOX1Q9UHG3 505 aa15.26■□□□□ 0.03
CHD3-211ENST00000481999 GMNCA6NCL1 334 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 M0QYV0 167 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 NUDT17P0C025 328 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 PTGIRP43119 386 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 TRIP13Q15645 432 aaPredicted RBP15.25■□□□□ 0.03
CHD3-211ENST00000481999 FAM47CQ5HY64 1035 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 KCNT1Q5JUK3 1230 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 ZFYVE27Q5T4F4 411 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 KAZNQ674X7 775 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 DNAJC24Q6P3W2 148 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 NOTUMQ6P988 496 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 DCUN1D2Q6PH85 259 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 TMEM176AQ96HP8 235 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 SNX27Q96L92 541 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 ZFP42Q96MM3 310 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 PABPC3Q9H361 631 aaKnown RBP15.25■□□□□ 0.03
CHD3-211ENST00000481999 PPANQ9NQ55 473 aaKnown RBP15.25■□□□□ 0.03
CHD3-211ENST00000481999 PARVAQ9NVD7 372 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 PARP2Q9UGN5 583 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 C17orf102A2RUQ5 167 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 TMEM191CA6NGB0 347 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 TRAPPC3O43617 180 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 GRAP2O75791 330 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 MICAL2O94851 1124 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 PAEPP09466 180 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 PMS2P54278 862 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 PLTPP55058 493 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 MAGOHP61326 146 aaKnown RBP15.25■□□□□ 0.03
CHD3-211ENST00000481999 RUNDC3BQ96NL0 473 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 DPEP3Q9H4B8 488 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 CNOT10Q9H9A5 744 aaKnown RBP15.25■□□□□ 0.03
CHD3-211ENST00000481999 MTUS1Q9ULD2 1270 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 C2CD2Q9Y426 696 aa15.25■□□□□ 0.03
CHD3-211ENST00000481999 SPTLC1O15269 473 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 AKR1A1P14550 325 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 VEGFBP49765 207 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 ZDHHC24Q6UX98 284 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 ACOT1Q86TX2 421 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 CCDC105Q8IYK2 499 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 TRIM11Q96F44 468 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 RGS7P49802 495 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 NBPF20Q3BBV1 942 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 UBXN11Q5T124 520 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 SH3PXD2AQ5TCZ1 1133 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 DENND2CQ68D51 928 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 GDF6Q6KF10 455 aaPredicted RBP15.24■□□□□ 0.03
CHD3-211ENST00000481999 ARFGAP1Q8N6T3 406 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 SOCS4Q8WXH5 440 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 TLCD1Q96CP7 247 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 HAUS1Q96CS2 278 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 MRPL47Q9HD33 250 aaKnown RBP15.24■□□□□ 0.03
CHD3-211ENST00000481999 METTL5Q9NRN9 209 aaKnown RBP15.24■□□□□ 0.03
CHD3-211ENST00000481999 GRHL1Q9NZI5 618 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 PCDHGC3Q9UN70 934 aa15.24■□□□□ 0.03
CHD3-211ENST00000481999 CCND3P30281 292 aaPredicted RBP15.23■□□□□ 0.03
CHD3-211ENST00000481999 RPL21P46778 160 aaKnown RBP15.23■□□□□ 0.03
CHD3-211ENST00000481999 VPS41P49754 854 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 RBP5P82980 135 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 PDE4CQ08493 712 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 NFX1Q12986 1120 aaKnown RBP15.23■□□□□ 0.03
CHD3-211ENST00000481999 FBXO25Q8TCJ0 367 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 MTRF1LQ9UGC7 380 aaKnown RBP15.23■□□□□ 0.03
CHD3-211ENST00000481999 ITGA11Q9UKX5 1188 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 PDGFRBP09619 1106 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 CYBAP13498 195 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 PSMC1P62191 440 aaKnown RBP15.23■□□□□ 0.03
CHD3-211ENST00000481999 BYSLQ13895 437 aaKnown RBP15.23■□□□□ 0.03
CHD3-211ENST00000481999 TAF5Q15542 800 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 CYP1B1Q16678 543 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 SGO2Q562F6 1265 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 PPP1R15BQ5SWA1 713 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 PPP1R26Q5T8A7 1209 aaPredicted RBP15.23■□□□□ 0.03
CHD3-211ENST00000481999 CROCCP2Q86T23 111 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 FAM228AQ86W67 206 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.23■□□□□ 0.03
CHD3-211ENST00000481999 VCPIP1Q96JH7 1222 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 EPB41L4BQ9H329 900 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 SYNCQ9H7C4 482 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 SAE1Q9UBE0 346 aaPredicted RBP15.23■□□□□ 0.03
CHD3-211ENST00000481999 TSPAN16Q9UKR8 245 aa15.23■□□□□ 0.03
CHD3-211ENST00000481999 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.23■□□□□ 0.03
CHD3-211ENST00000481999 SMIM28A0A1B0GU29 152 aa15.22■□□□□ 0.03
CHD3-211ENST00000481999 DCDC2CA8MYV0 355 aa15.22■□□□□ 0.03
CHD3-211ENST00000481999 CA12O43570 354 aa15.22■□□□□ 0.03
CHD3-211ENST00000481999 LSM8O95777 96 aaKnown RBP15.22■□□□□ 0.03
CHD3-211ENST00000481999 ATF7P17544 494 aaPredicted RBP15.22■□□□□ 0.03
CHD3-211ENST00000481999 LMO2P25791 158 aa15.22■□□□□ 0.03
CHD3-211ENST00000481999 IL1R2P27930 398 aa15.22■□□□□ 0.03
CHD3-211ENST00000481999 CDH5P33151 784 aaPredicted RBP15.22■□□□□ 0.03
CHD3-211ENST00000481999 COILP38432 576 aaPredicted RBP15.22■□□□□ 0.03
CHD3-211ENST00000481999 GPD2P43304 727 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms