RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 TBC1D4O60343 1298 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 MICAL2O94851 1124 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 PDGFRBP09619 1106 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 FAM200BP0CF97 657 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 MMP8P22894 467 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 LMO2P25791 158 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 TKTP29401 623 aaKnown RBP10.76□□□□□ -0.69
USP39-215ENST00000481409 SCNN1AP37088 669 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 GPD2P43304 727 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 PLA2G4AP47712 749 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 GABRB2P47870 512 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 RPL34P49207 117 aaKnown RBP10.76□□□□□ -0.69
USP39-215ENST00000481409 GALCP54803 685 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 CYP27A1Q02318 531 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 DSG1Q02413 1049 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 CFAP221Q4G0U5 840 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 VARS2Q5ST30 1063 aaKnown RBP10.76□□□□□ -0.69
USP39-215ENST00000481409 PPP1R26Q5T8A7 1209 aaPredicted RBP10.76□□□□□ -0.69
USP39-215ENST00000481409 OSTM1Q86WC4 334 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 ERICH1Q86X53 443 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 REXO1L1PQ8IX06 675 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 MCOLN2Q8IZK6 566 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 TMEM130Q8N3G9 435 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 C1orf131Q8NDD1 294 aaKnown RBP10.76□□□□□ -0.69
USP39-215ENST00000481409 ACRBPQ8NEB7 543 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 IPO4Q8TEX9 1081 aaKnown RBP10.76□□□□□ -0.69
USP39-215ENST00000481409 HASPINQ8TF76 798 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 RFFLQ8WZ73 363 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 SMARCD1Q96GM5 515 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 PPP1R13BQ96KQ4 1090 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 RNPC3Q96LT9 517 aaKnown RBP10.76□□□□□ -0.69
USP39-215ENST00000481409 PCDHB18PQ96TA0 734 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 PKMYT1Q99640 499 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 ZSWIM1Q9BR11 485 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 DESI2Q9BSY9 194 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 DUSP16Q9BY84 665 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 GPR62Q9BZJ7 368 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 ZCWPW1Q9H0M4 648 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 TMEM51Q9NW97 253 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 FNIP2Q9P278 1114 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 CACNG4Q9UBN1 327 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 PCDHA11Q9Y5I1 949 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 NCANO14594 1321 aa10.76□□□□□ -0.69
USP39-215ENST00000481409 XPO1O14980 1071 aaKnown RBP10.75□□□□□ -0.69
USP39-215ENST00000481409 KIF5CO60282 957 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 MTA2O94776 668 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 NPR3P17342 541 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 BMPR1AP36894 532 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 ARHGAP25P42331 645 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 MAGEA11P43364 429 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 GLUD2P49448 558 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 RGS19P49795 217 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 GPR17Q13304 367 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 ZNF268Q14587 947 aaPredicted RBP10.75□□□□□ -0.69
USP39-215ENST00000481409 PTPN14Q15678 1187 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 GOLGA7BQ2TAP0 167 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 CTXN3Q4LDR2 81 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 NAA35Q5VZE5 725 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 TPGS2Q68CL5 300 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 SLC8B1Q6J4K2 584 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 PDE12Q6L8Q7 609 aaKnown RBP10.75□□□□□ -0.69
USP39-215ENST00000481409 KIAA1841Q6NSI8 718 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 FAM117BQ6P1L5 589 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 VSTM1Q6UX27 236 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 MON1BQ7L1V2 547 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 ARCQ7LC44 396 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 TMEM110Q86TL2 294 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 SCML4Q8N228 414 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 TRIM58Q8NG06 486 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 SPPL2BQ8TCT7 592 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 SLC35F5Q8WV83 523 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 KCTD13Q8WZ19 329 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 RABGGTAQ92696 567 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 ALS2CR12Q96Q35 445 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 GDF15Q99988 308 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 RTP3Q9BQQ7 232 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 DPEP3Q9H4B8 488 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 CSNK1G1Q9HCP0 422 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 ACP6Q9NPH0 428 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 PARVAQ9NVD7 372 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 ADAM22Q9P0K1 906 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 MTRRQ9UBK8 725 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 NME7Q9Y5B8 376 aa10.75□□□□□ -0.69
USP39-215ENST00000481409 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.74□□□□□ -0.69
USP39-215ENST00000481409 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.74□□□□□ -0.69
USP39-215ENST00000481409 TRIM66O15016 1216 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 SART1O43290 800 aaKnown RBP10.74□□□□□ -0.69
USP39-215ENST00000481409 CYP1A2P05177 515 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 URODP06132 367 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 LINC00271P0C7V0 271 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 PDCLQ13371 301 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 RAB30Q15771 203 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 MDH1BQ5I0G3 518 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 DENND1BQ6P3S1 775 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 RTL10Q7L3V2 364 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 CEP57Q86XR8 500 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 SPATA2LQ8IUW3 424 aaPredicted RBP10.74□□□□□ -0.69
USP39-215ENST00000481409 SYCE1Q8N0S2 351 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 FUKQ8N0W3 1084 aa10.74□□□□□ -0.69
USP39-215ENST00000481409 C12orf29Q8N999 325 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms