RNA–Protein interactions for RNA: ENST00000480104.5

USP11-208, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 697 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-208ENST00000480104 LARGE1O95461 756 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 ATF6P18850 670 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 ACTN2P35609 894 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 CDR1P51861 262 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 USP4Q13107 963 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 NR1H3Q13133 447 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 PPP2R5CQ13362 524 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 ZNF268Q14587 947 aaPredicted RBP12.97□□□□□ -0.33
USP11-208ENST00000480104 TBC1D25Q3MII6 688 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 DCAF4L1Q3SXM0 396 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 CDCA2Q69YH5 1023 aaPredicted RBP12.97□□□□□ -0.33
USP11-208ENST00000480104 POTEDQ86YR6 584 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 C18orf25Q96B23 403 aaPredicted RBP12.97□□□□□ -0.33
USP11-208ENST00000480104 ZMAT2Q96NC0 199 aaKnown RBP12.97□□□□□ -0.33
USP11-208ENST00000480104 SEPT5Q99719 369 aaPredicted RBP12.97□□□□□ -0.33
USP11-208ENST00000480104 SLC38A7Q9NVC3 462 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 HSPBP1Q9NZL4 362 aa12.97□□□□□ -0.33
USP11-208ENST00000480104 OR6C75A6NL08 312 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 LIG1P18858 919 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 DDX6P26196 483 aaKnown RBP eCLIP12.96□□□□□ -0.33
USP11-208ENST00000480104 MARCKSP29966 332 aaPredicted RBP12.96□□□□□ -0.33
USP11-208ENST00000480104 GNA11P29992 359 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 KIR2DL1P43626 348 aaPredicted RBP12.96□□□□□ -0.33
USP11-208ENST00000480104 NFKB2Q00653 900 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 WDR45BQ5MNZ6 344 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 BROXQ5VW32 411 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 SYNE3Q6ZMZ3 975 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 ATG14Q6ZNE5 492 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 USP49Q70CQ1 688 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 ZBTB8OSQ8IWT0 167 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 TBCKQ8TEA7 893 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 GIPC2Q8TF65 315 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 CCDC12Q8WUD4 166 aaPredicted RBP12.96□□□□□ -0.33
USP11-208ENST00000480104 YTHDC1Q96MU7 727 aaKnown RBP12.96□□□□□ -0.33
USP11-208ENST00000480104 LINC00597Q9H2U6 94 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 CD93Q9NPY3 652 aa12.96□□□□□ -0.33
USP11-208ENST00000480104 RPL9P32969 192 aaKnown RBP12.95□□□□□ -0.34
USP11-208ENST00000480104 GRK6P43250 576 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 NLRP12P59046 1061 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 CTTNQ14247 550 aaKnown RBP12.95□□□□□ -0.34
USP11-208ENST00000480104 TAF12Q16514 161 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 XKR4Q5GH76 650 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 IL27RAQ6UWB1 636 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 MON1AQ86VX9 555 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 BICD2Q8TD16 824 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 OXER1Q8TDS5 423 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 FOXJ1Q92949 421 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 DYDC2Q96IM9 177 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 MIR1-1HGQ9H1L0 117 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 SLKQ9H2G2 1235 aaPredicted RBP12.95□□□□□ -0.34
USP11-208ENST00000480104 GPRC5CQ9NQ84 441 aa12.95□□□□□ -0.34
USP11-208ENST00000480104 TRIP11Q15643 1979 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 CSMD1Q96PZ7 3565 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 CYP3A7-CYP3A51PA0A087WV96 503 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 MEI4A8MW99 385 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 SLC37A4O43826 429 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 NDUFS2O75306 463 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 ZNF217O75362 1048 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 DGAT1O75907 488 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 KAT7O95251 611 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 NFATC1O95644 943 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 F11P03951 625 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 CYP3A7P24462 503 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 FAM160A1Q05DH4 1040 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 SUZ12Q15022 739 aaKnown RBP12.94□□□□□ -0.34
USP11-208ENST00000480104 MGAT5BQ3V5L5 792 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 HES3Q5TGS1 186 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 KIAA1614Q5VZ46 1190 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 HIST2H2BCQ6DN03 193 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 ALKAL1Q6UXT8 129 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 CEP120Q8N960 986 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 ZNF248Q8NDW4 579 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 DNASE2BQ8WZ79 361 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 OXCT2Q9BYC2 517 aaPredicted RBP12.94□□□□□ -0.34
USP11-208ENST00000480104 ZSWIM4Q9H7M6 989 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 TOPORSQ9NS56 1045 aaPredicted RBP12.94□□□□□ -0.34
USP11-208ENST00000480104 FTSJ1Q9UET6 329 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 NF1P21359 2839 aa12.94□□□□□ -0.34
USP11-208ENST00000480104 M0QZQ0 153 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 ACKR2O00590 384 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 TRIM66O15016 1216 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 AFPP02771 609 aaKnown RBP12.93□□□□□ -0.34
USP11-208ENST00000480104 NDUFV2P19404 249 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 CDC27P30260 824 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 SLC6A11P48066 632 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 YARSP54577 528 aaKnown RBP12.93□□□□□ -0.34
USP11-208ENST00000480104 PCBP4P57723 403 aaKnown RBP12.93□□□□□ -0.34
USP11-208ENST00000480104 OSTNP61366 133 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 VAC14Q08AM6 782 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 MYBPC2Q14324 1141 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 PPP4R3AQ6IN85 833 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 TMEM130Q8N3G9 435 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 ENGASEQ8NFI3 743 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 SNRNP27Q8WVK2 155 aaKnown RBP12.93□□□□□ -0.34
USP11-208ENST00000480104 TSC1Q92574 1164 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 MRPS31Q92665 395 aaKnown RBP12.93□□□□□ -0.34
USP11-208ENST00000480104 ERLEC1Q96DZ1 483 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 SLC22A12Q96S37 553 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 CCDC113Q9H0I3 377 aa12.93□□□□□ -0.34
USP11-208ENST00000480104 HSFX1Q9UBD0 423 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms