RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 TMEM63BQ5T3F8 832 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 TMEM192Q8IY95 271 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 ZNF317Q96PQ6 595 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-212ENST00000477970 PTPN18Q99952 460 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 PLEKHA5Q9HAU0 1116 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 PCDH9Q9HC56 1237 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 CYTH4Q9UIA0 394 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 CEP350Q5VT06 3117 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 A0A087WZ62 844 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 CCL15-CCL14A0A0B4J2E2 113 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 SMAPO00193 183 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 GJB6O95452 261 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 KRT3P12035 628 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 DRD4P21917 467 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 SSTR3P32745 418 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-212ENST00000477970 RASA2Q15283 850 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 CCL15Q16663 113 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 KCTD19Q17RG1 926 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-212ENST00000477970 TMEM132AQ24JP5 1023 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 SLC10A6Q3KNW5 377 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 UBAP2Q5T6F2 1119 aaKnown RBP12.87□□□□□ -0.35
PTPRF-212ENST00000477970 APBB1IPQ7Z5R6 666 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-212ENST00000477970 CHMP6Q96FZ7 201 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 FDXACB1Q9BRP7 624 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-212ENST00000477970 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-212ENST00000477970 EURLQ9NYK6 297 aa12.87□□□□□ -0.35
PTPRF-212ENST00000477970 TSPAN1O60635 241 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 CHN1P15882 459 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 TCF4P15884 667 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 ARF4P18085 180 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-212ENST00000477970 PCK1P35558 622 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 IRX5P78411 483 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-212ENST00000477970 GRB14Q14449 540 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 TMEM132DQ14C87 1099 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 SCARA5Q6ZMJ2 495 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 BBS12Q6ZW61 710 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 PCGF5Q86SE9 256 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 ELOVL4Q9GZR5 314 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 PPANQ9NQ55 473 aaKnown RBP12.86□□□□□ -0.35
PTPRF-212ENST00000477970 SHOC2Q9UQ13 582 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 CASP8AP2Q9UKL3 1982 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 LRCH4O75427 683 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 ITGB3P05106 788 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 IFI35P80217 286 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-212ENST00000477970 RBP5P82980 135 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 WDR72Q3MJ13 1102 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 TADA2BQ86TJ2 420 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 VSIG1Q86XK7 387 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 TDRPQ86YL5 185 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 TSPAN18Q96SJ8 248 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 DDX23Q9BUQ8 820 aaKnown RBP12.86□□□□□ -0.35
PTPRF-212ENST00000477970 NXF1Q9UBU9 619 aaKnown RBP12.86□□□□□ -0.35
PTPRF-212ENST00000477970 DNPEPQ9ULA0 475 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 BARX2Q9UMQ3 279 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-212ENST00000477970 CITO14578 2027 aa12.86□□□□□ -0.35
PTPRF-212ENST00000477970 MICAL2O94851 1124 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 PSMA2P25787 234 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 GPD2P43304 727 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 LBX1P52954 281 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 DUSP28Q4G0W2 176 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 ZNF394Q53GI3 561 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 CMASQ8NFW8 434 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-212ENST00000477970 USP6NLQ92738 828 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 SMYD3Q9H7B4 428 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 DDX20Q9UHI6 824 aaKnown RBP12.85□□□□□ -0.35
PTPRF-212ENST00000477970 TPX2Q9ULW0 747 aaKnown RBP12.85□□□□□ -0.35
PTPRF-212ENST00000477970 RRN3P2A6NIE6 340 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 PDHXO00330 501 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 FSBPO95073 299 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 SNAI1O95863 264 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-212ENST00000477970 RFC1P35251 1148 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-212ENST00000477970 SSR1P43307 286 aaKnown RBP12.85□□□□□ -0.35
PTPRF-212ENST00000477970 PSMC1P62191 440 aaKnown RBP12.85□□□□□ -0.35
PTPRF-212ENST00000477970 ATP13A4Q4VNC1 1196 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 MARCH8Q5T0T0 291 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 LCLAT1Q6UWP7 414 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 EXOC3L1Q86VI1 746 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 CCDC25Q86WR0 208 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 ARFGAP1Q8N6T3 406 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 FETUBQ9UGM5 382 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 KIAA0754O94854 1291 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 ENDOD1O94919 500 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 ERBB2P04626 1255 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 KRT19P08727 400 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 CYP2C8P10632 490 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 OSTNP61366 133 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 NR1H3Q13133 447 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 P3H1Q32P28 736 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 CYP4A22Q5TCH4 519 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 HPDLQ96IR7 371 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 ACAP3Q96P50 834 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 CPXM1Q96SM3 734 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 CCDC77Q9BR77 488 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 AKT3Q9Y243 479 aa12.85□□□□□ -0.35
PTPRF-212ENST00000477970 H3BRB1 525 aa12.84□□□□□ -0.35
PTPRF-212ENST00000477970 DPYSL4O14531 572 aa12.84□□□□□ -0.35
PTPRF-212ENST00000477970 CDH16O75309 829 aa12.84□□□□□ -0.35
PTPRF-212ENST00000477970 MMP3P08254 477 aa12.84□□□□□ -0.35
PTPRF-212ENST00000477970 SETSIPP0DME0 302 aa12.84□□□□□ -0.35
PTPRF-212ENST00000477970 KRT10P13645 584 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms