RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	HNRNPDL	O14979	420 aa	Known RBP	4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	TRIAP1	O43715	76 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	PLA2G6	O60733	806 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	NDUFA10	O95299	355 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	FOS	P01100	380 aa	Predicted RBP	4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	MYL4	P12829	197 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	CHRM3	P20309	590 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	EEF1G	P26641	437 aa	Known RBP	4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	ACVR2A	P27037	513 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	PPIF	P30405	207 aa	Known RBP	4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	PTGS2	P35354	604 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	IL6ST	P40189	918 aa	Predicted RBP	4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	NPTX2	P47972	431 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	HSPA7	P48741	367 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	NDUFV1	P49821	464 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	CPT1A	P50416	773 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	DGKE	P52429	567 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	ARHGEF7	Q14155	803 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	MPEG1	Q2M385	716 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	SLC35G1	Q2M3R5	365 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	ZIK1	Q3SY52	487 aa	Predicted RBP	4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	CD300E	Q496F6	205 aa	Predicted RBP	4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	FCRL6	Q6DN72	434 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	LAYN	Q6UX15	382 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	TMEM108	Q6UXF1	575 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	ZNF280B	Q86YH2	543 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	ARHGEF19	Q8IW93	802 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	ZNF503	Q96F45	646 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	TMEM41A	Q96HV5	264 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	KRTAP4-9	Q9BYQ8	210 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	FAM83D	Q9H4H8	585 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	TM7SF3	Q9NS93	570 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	INTS13	Q9NVM9	706 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	DNMT3B	Q9UBC3	853 aa	Known RBP	4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	DKK4	Q9UBT3	224 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	ZNF212	Q9UDV6	495 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	LRCH1	Q9Y2L9	728 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	HS3ST4	Q9Y661	456 aa		4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044	ARID4B	Q4LE39	1312 aa	Predicted RBP	4.62	□□□□□ -1.67
PTCD3-209	ENST00000472044		A0A0B4J269	797 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044		F5H697	171 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	ADAMTS3	O15072	1205 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	C1S	P09871	688 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	SRGN	P10124	158 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	HARS	P12081	509 aa	Known RBP	4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	KCNA3	P22001	575 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	GATA3	P23771	443 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	TNFAIP2	Q03169	654 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	SCAP	Q12770	1279 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	FSTL1	Q12841	308 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	MYO1E	Q12965	1108 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	CHAF1A	Q13111	956 aa	Predicted RBP	4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	STK3	Q13188	491 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	TUBB3	Q13509	450 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	GEN1	Q17RS7	908 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	NRN1L	Q496H8	165 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	MIIP	Q5JXC2	388 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	FAM83B	Q5T0W9	1011 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	USP17L6P	Q6QN14	398 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	SKAP1	Q86WV1	359 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	MYLK4	Q86YV6	388 aa	Predicted RBP	4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	HAS1	Q92839	578 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	RNF31	Q96EP0	1072 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	PLEKHG4B	Q96PX9	1271 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	TTLL2	Q9BWV7	592 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	STK33	Q9BYT3	514 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	AMBRA1	Q9C0C7	1298 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	MYH16	Q9H6N6	1097 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	HDAC9	Q9UKV0	1011 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	NDRG4	Q9ULP0	352 aa	Known RBP	4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	MAN2B2	Q9Y2E5	1009 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	PCDHGB2	Q9Y5G2	931 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	CDY1	Q9Y6F8	540 aa		4.61	□□□□□ -1.67
PTCD3-209	ENST00000472044	FER1L4	A9Z1Z3	1794 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044		A0A087WZ62	844 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	AQP7P3	A6NL99	342 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	SPDEF	O95238	335 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	TEC	P42680	631 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	COPA	P53621	1224 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	GUCY1B3	Q02153	619 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	KRT17	Q04695	432 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	FOXE3	Q13461	319 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	TUBA3C	Q13748	450 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	E2F2	Q14209	437 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	ZNF750	Q32MQ0	723 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	PREPL	Q4J6C6	727 aa	Predicted RBP	4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	TIGD2	Q4W5G0	525 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	RBM20	Q5T481	1227 aa	Known RBP	4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	ICE2	Q659A1	982 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	PLAG1	Q6DJT9	500 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	TUBA3E	Q6PEY2	450 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	KRT73	Q86Y46	540 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	SYTL1	Q8IYJ3	562 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	SYNE4	Q8N205	404 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	TXLNB	Q8N3L3	684 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	LNX2	Q8N448	690 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	SMCR8	Q8TEV9	937 aa	Predicted RBP	4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	ZNF566	Q969W8	418 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	TMEM125	Q96AQ2	219 aa		4.6	□□□□□ -1.67
PTCD3-209	ENST00000472044	TRIM5	Q9C035	493 aa		4.6	□□□□□ -1.67

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