RNA–Protein interactions for RNA: ENST00000471996.1

SORT1-203, Transcript of sortilin 1, humanhuman

TSL 3

Gene SORT1, Length 469 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SORT1-203ENST00000471996 PCDHB5Q9Y5E4 795 aa20.52■□□□□ 0.88
SORT1-203ENST00000471996 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 ANTXRLA6NF34 631 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 OGTO15294 1046 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 MAP3K13O43283 966 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 USP17L7P0C7H9 530 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 DPP6P42658 865 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 GPR15P49685 360 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 KRT79Q5XKE5 535 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 WSCD1Q658N2 575 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 TMEM92Q6UXU6 159 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 ARMCX6Q7L4S7 300 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 RAB44Q7Z6P3 723 aaPredicted RBP20.51■□□□□ 0.87
SORT1-203ENST00000471996 TTC30AQ86WT1 665 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 EFCAB13Q8IY85 973 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 TMEFF1Q8IYR6 380 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 HDDC3Q8N4P3 179 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 CCDC33Q8N5R6 958 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 STKLD1Q8NE28 680 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 TTC16Q8NEE8 873 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 RLN3Q8WXF3 142 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 FAM212AQ96EL1 285 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 SPACA7Q96KW9 195 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 CYP2S1Q96SQ9 504 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 FOXP1Q9H334 677 aaPredicted RBP20.51■□□□□ 0.87
SORT1-203ENST00000471996 UXTQ9UBK9 157 aaPredicted RBP20.51■□□□□ 0.87
SORT1-203ENST00000471996 MBD1Q9UIS9 605 aaPredicted RBP20.51■□□□□ 0.87
SORT1-203ENST00000471996 THADAQ6YHU6 1953 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 LOC400499M0QZD8 3231 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 ITPR1Q14643 2758 aa20.51■□□□□ 0.87
SORT1-203ENST00000471996 PP2D1A8MPX8 630 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 NFICP08651 508 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 HNRNPLP14866 589 aaKnown RBP eCLIP20.5■□□□□ 0.874e-17■■■■■ 40.2
SORT1-203ENST00000471996 OPRD1P41143 372 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 LIG4P49917 911 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 FAM193AP78312 1265 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 MRPS21P82921 87 aaKnown RBP20.5■□□□□ 0.87
SORT1-203ENST00000471996 ZNF423Q2M1K9 1284 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 SPDYCQ5MJ68 293 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 PEAR1Q5VY43 1037 aaPredicted RBP20.5■□□□□ 0.87
SORT1-203ENST00000471996 KCNN1Q92952 543 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 SLC22A12Q96S37 553 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 PYM1Q9BRP8 204 aaKnown RBP20.5■□□□□ 0.87
SORT1-203ENST00000471996 PI4K2AQ9BTU6 479 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 LINC00597Q9H2U6 94 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 TRPC7Q9HCX4 862 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 TMLHEQ9NVH6 421 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 DERAQ9Y315 318 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 PCNX2A6NKB5 2137 aa20.5■□□□□ 0.87
SORT1-203ENST00000471996 CACNA1EQ15878 2313 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 TSC2P49815 1807 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 TRAV19A0A0A6YYK7 116 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 H0YCG3 227 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 PRPF40AO75400 957 aaKnown RBP20.49■□□□□ 0.87
SORT1-203ENST00000471996 NOL4O94818 638 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 CKMP06732 381 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 CDC25AP30304 524 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 HOXD12P35452 270 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 TRAPPC10P48553 1259 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 ATXN3P54252 364 aaPredicted RBP20.49■□□□□ 0.87
SORT1-203ENST00000471996 SCAPQ12770 1279 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 TMEM132DQ14C87 1099 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 SDHAF4Q5VUM1 108 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 LYSMD4Q5XG99 296 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 LMBRD2Q68DH5 695 aaPredicted RBP20.49■□□□□ 0.87
SORT1-203ENST00000471996 FRMD1Q8N878 549 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 WHAMMQ8TF30 809 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 TRMT2BQ96GJ1 504 aaKnown RBP20.49■□□□□ 0.87
SORT1-203ENST00000471996 CCSER1Q9C0I3 900 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 CPSF3Q9UKF6 684 aaKnown RBP20.49■□□□□ 0.87
SORT1-203ENST00000471996 PILRBQ9UKJ0 227 aa20.49■□□□□ 0.87
SORT1-203ENST00000471996 CIZ1Q9ULV3 898 aaPredicted RBP20.49■□□□□ 0.87
SORT1-203ENST00000471996 NFATC1O95644 943 aa20.48■□□□□ 0.87
SORT1-203ENST00000471996 TAF6P49848 677 aa20.48■□□□□ 0.87
SORT1-203ENST00000471996 NCKAP1LP55160 1127 aa20.48■□□□□ 0.87
SORT1-203ENST00000471996 NBR1Q14596 966 aa20.48■□□□□ 0.87
SORT1-203ENST00000471996 NFE2Q16621 373 aaPredicted RBP20.48■□□□□ 0.87
SORT1-203ENST00000471996 COL28A1Q2UY09 1125 aa20.48■□□□□ 0.87
SORT1-203ENST00000471996 SH3RF2Q8TEC5 729 aa20.48■□□□□ 0.87
SORT1-203ENST00000471996 MYRFLQ96LU7 910 aa20.48■□□□□ 0.87
SORT1-203ENST00000471996 MMTAG2Q9BU76 263 aaKnown RBP20.48■□□□□ 0.87
SORT1-203ENST00000471996 GCNT4Q9P109 453 aa20.48■□□□□ 0.87
SORT1-203ENST00000471996 SLC6A14Q9UN76 642 aa20.48■□□□□ 0.87
SORT1-203ENST00000471996 ATXN2Q99700 1313 aaKnown RBP20.48■□□□□ 0.87
SORT1-203ENST00000471996 KIAA1549LQ6ZVL6 1849 aa20.48■□□□□ 0.87
SORT1-203ENST00000471996 ADAMTS20P59510 1910 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 A0A0B4J269 797 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 HNRNPDLO14979 420 aaKnown RBP20.47■□□□□ 0.87
SORT1-203ENST00000471996 OPHN1O60890 802 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 SEC24BO95487 1268 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 PIGRP01833 764 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 CFIP05156 583 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 TCF3P15923 654 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 ITPKAP23677 461 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 RPL10AP62906 217 aaKnown RBP20.47■□□□□ 0.87
SORT1-203ENST00000471996 TSPY1Q01534 308 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 HNRNPDQ14103 355 aaKnown RBP20.47■□□□□ 0.87
SORT1-203ENST00000471996 DDR2Q16832 855 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 GAB4Q2WGN9 574 aa20.47■□□□□ 0.87
SORT1-203ENST00000471996 MAP7D1Q3KQU3 841 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms