RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 HOXA6P31267 233 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 SOWAHAQ2M3V2 549 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 INTS6LQ5JSJ4 861 aaKnown RBP13.18□□□□□ -0.3
HDAC3-204ENST00000469207 BRSK2Q8IWQ3 736 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 SCN4BQ8IWT1 228 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 SYCP3Q8IZU3 236 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 ARL14EPQ8N8R7 260 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-204ENST00000469207 GAB3Q8WWW8 586 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 MRPS31Q92665 395 aaKnown RBP13.18□□□□□ -0.3
HDAC3-204ENST00000469207 ACBD6Q9BR61 282 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 RBAKQ9NYW8 714 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-204ENST00000469207 CCDC39Q9UFE4 941 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 SLC8A2Q9UPR5 921 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 INVSQ9Y283 1065 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 SRPRBQ9Y5M8 271 aaKnown RBP13.18□□□□□ -0.3
HDAC3-204ENST00000469207 WNT6Q9Y6F9 365 aa13.18□□□□□ -0.3
HDAC3-204ENST00000469207 ZNF638Q14966 1978 aaKnown RBP13.18□□□□□ -0.3
HDAC3-204ENST00000469207 PTPRJQ12913 1337 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 NOL4O94818 638 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 CCDC192P0DO97 292 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 ABCD1P33897 745 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 RAP1GAPP47736 663 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 ZXDBP98169 803 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 POU5F1Q01860 360 aaKnown RBP13.17□□□□□ -0.3
HDAC3-204ENST00000469207 PSMD2Q13200 908 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 NFE2Q16621 373 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-204ENST00000469207 AASDHQ4L235 1098 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-204ENST00000469207 TCEAL6Q6IPX3 200 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 CC2D1AQ6P1N0 951 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-204ENST00000469207 NT5DC4Q86YG4 428 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 OR5B17Q8NGF7 314 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 RPLP0P6Q8NHW5 317 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 TCEAL3Q969E4 200 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 HVCN1Q96D96 273 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 ZNF560Q96MR9 790 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 P2RY13Q9BPV8 354 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 MTMR12Q9C0I1 747 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 ECT2Q9H8V3 914 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 DUS2Q9NX74 493 aaKnown RBP13.17□□□□□ -0.3
HDAC3-204ENST00000469207 STK17AQ9UEE5 414 aa13.17□□□□□ -0.3
HDAC3-204ENST00000469207 TPRP12270 2363 aaKnown RBP13.17□□□□□ -0.3
HDAC3-204ENST00000469207 GABRDO14764 452 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 PDGFRBP09619 1106 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 ZNF806P0C7X5 589 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 DDX6P26196 483 aaKnown RBP eCLIP13.16□□□□□ -0.3
HDAC3-204ENST00000469207 PNPLA4P41247 253 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 USP46P62068 366 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 PSMC1P62191 440 aaKnown RBP13.16□□□□□ -0.3
HDAC3-204ENST00000469207 RPL10AP62906 217 aaKnown RBP13.16□□□□□ -0.3
HDAC3-204ENST00000469207 MYL7Q01449 175 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 RESTQ13127 1097 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 MTF1Q14872 753 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 ZNF77Q15935 545 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 CACNA2D4Q7Z3S7 1137 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 SPATA2LQ8IUW3 424 aaPredicted RBP13.16□□□□□ -0.3
HDAC3-204ENST00000469207 ADGRF2Q8IZF7 708 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 PDILTQ8N807 584 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 CACTINQ8WUQ7 758 aaKnown RBP13.16□□□□□ -0.3
HDAC3-204ENST00000469207 OSCP1Q8WVF1 389 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 MYRFLQ96LU7 910 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 FOXD4L1Q9NU39 408 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 PANK4Q9NVE7 773 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 GDAP2Q9NXN4 497 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 GCNT4Q9P109 453 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 SEL1LQ9UBV2 794 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 EXOC7Q9UPT5 735 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 PCDHB13Q9Y5F0 798 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 OBSL1O75147 1896 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 EML5Q05BV3 1969 aa13.16□□□□□ -0.3
HDAC3-204ENST00000469207 SCAMP3O14828 347 aaKnown RBP13.15□□□□□ -0.3
HDAC3-204ENST00000469207 TM4SF5O14894 197 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 ATG13O75143 517 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 EPN2O95208 641 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 LDHAP00338 332 aaKnown RBP13.15□□□□□ -0.3
HDAC3-204ENST00000469207 CST3P01034 146 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-204ENST00000469207 CKMP06732 381 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 GAP43P17677 238 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 SYT1P21579 422 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 GARTP22102 1010 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 BDNFP23560 247 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 HOXD13P35453 343 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 RBP5P82980 135 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 FAM160A1Q05DH4 1040 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 CUL4AQ13619 759 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 EML3Q32P44 896 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 N4BP2L1Q5TBK1 243 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-204ENST00000469207 FAM171BQ6P995 826 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 CBWD2Q8IUF1 395 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 TMEM86AQ8N2M4 240 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 RDH13Q8NBN7 331 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 SH3RF2Q8TEC5 729 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 LEO1Q8WVC0 666 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-204ENST00000469207 KBTBD7Q8WVZ9 684 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 CD101Q93033 1021 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 USP28Q96RU2 1077 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 DUSP15Q9H1R2 295 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-204ENST00000469207 KIF9Q9HAQ2 790 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 CRTAC1Q9NQ79 661 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 NME7Q9Y5B8 376 aa13.15□□□□□ -0.3
HDAC3-204ENST00000469207 ZFHX4Q86UP3 3567 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms