RNA–Protein interactions for RNA: ENST00000466969.1

UBR4-210, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-210	ENST00000466969	DNASE2B	Q8WZ79	361 aa		13.77	□□□□□ -0.21
UBR4-210	ENST00000466969	MRPS31	Q92665	395 aa	Known RBP	13.77	□□□□□ -0.21
UBR4-210	ENST00000466969	YTHDC1	Q96MU7	727 aa	Known RBP	13.77	□□□□□ -0.21
UBR4-210	ENST00000466969	ACAP3	Q96P50	834 aa		13.77	□□□□□ -0.21
UBR4-210	ENST00000466969	DPH1	Q9BZG8	443 aa		13.77	□□□□□ -0.21
UBR4-210	ENST00000466969	PCDHB8	Q9UN66	801 aa		13.77	□□□□□ -0.21
UBR4-210	ENST00000466969	BSN	Q9UPA5	3926 aa		13.77	□□□□□ -0.21
UBR4-210	ENST00000466969	NFE2L3	Q9Y4A8	694 aa		13.77	□□□□□ -0.21
UBR4-210	ENST00000466969	MYLK	Q15746	1914 aa		13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	SMIM28	A0A1B0GU29	152 aa		13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	MTMR11	A4FU01	709 aa		13.76	□□□□□ -0.21
UBR4-210	ENST00000466969		K7ENP7	123 aa		13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	ELAVL4	P26378	380 aa	Known RBP	13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	BNC1	Q01954	994 aa		13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	FAM160A1	Q05DH4	1040 aa		13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	INO80C	Q6PI98	192 aa	Predicted RBP	13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	TRMT11	Q7Z4G4	463 aa	Known RBP	13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	EXD3	Q8N9H8	876 aa		13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	PNKP	Q96T60	521 aa		13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	SEPT5	Q99719	369 aa	Predicted RBP	13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	XPNPEP1	Q9NQW7	623 aa		13.76	□□□□□ -0.21
UBR4-210	ENST00000466969	KNL1	Q8NG31	2342 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	NID2	Q14112	1375 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	CLEC18A	A5D8T8	446 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	LRRIQ4	A6NIV6	560 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	OR6C75	A6NL08	312 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	ENC1	O14682	589 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	KAT7	O95251	611 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	P4HB	P07237	508 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	NMT1	P30419	496 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	RPL9	P32969	192 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	KIR2DL1	P43626	348 aa	Predicted RBP	13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	TUFM	P49411	452 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	CCT8	P50990	548 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	PRPF4B	Q13523	1007 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	ZNF77	Q15935	545 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	INF2	Q27J81	1249 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	DCAF4L1	Q3SXM0	396 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	ANKRD45	Q5TZF3	282 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	PPP4R3A	Q6IN85	833 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	XKR5	Q6UX68	686 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	CLEC18B	Q6UXF7	455 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	USP37	Q86T82	979 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	MICU3	Q86XE3	530 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	TTC9B	Q8N6N2	239 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	CLEC18C	Q8NCF0	446 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	HIC2	Q96JB3	615 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	ZFR	Q96KR1	1074 aa	Known RBP	13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	MTMR9	Q96QG7	549 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	ARHGAP9	Q9BRR9	750 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	MTA3	Q9BTC8	594 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	HSFX1	Q9UBD0	423 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	ICE1	Q9Y2F5	2266 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	ZFHX3	Q15911	3703 aa		13.75	□□□□□ -0.21
UBR4-210	ENST00000466969	TRIP11	Q15643	1979 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969		A0A1B0GVT2	93 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	PRC1	O43663	620 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	PCDHGA12	O60330	932 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	OAZ2	O95190	189 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	HOXB2	P14652	356 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	GLDC	P23378	1020 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	GLRA2	P23416	452 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	ARL2	P36404	184 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	YARS	P54577	528 aa	Known RBP	13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	USP4	Q13107	963 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	KRTAP21-3	Q3LHN1	58 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	MGAT5B	Q3V5L5	792 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	FBXL19	Q6PCT2	694 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	MON1A	Q86VX9	555 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	SFTPA1	Q8IWL2	248 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	ZBTB8OS	Q8IWT0	167 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	C4orf19	Q8IY42	314 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	SLK	Q9H2G2	1235 aa	Predicted RBP	13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	LINC00597	Q9H2U6	94 aa		13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	TOPORS	Q9NS56	1045 aa	Predicted RBP	13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	RBM28	Q9NW13	759 aa	Known RBP	13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	WRAP73	Q9P2S5	460 aa	Predicted RBP	13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	PLEKHB1	Q9UF11	243 aa	Predicted RBP	13.74	□□□□□ -0.21
UBR4-210	ENST00000466969	MYO18A	Q92614	2054 aa	Known RBP	13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	SH2B2	O14492	632 aa	Predicted RBP	13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	TRIM66	O15016	1216 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	LDOC1	O95751	146 aa	Predicted RBP	13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	NCAM1	P13591	858 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	GNA11	P29992	359 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	TNFRSF4	P43489	277 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	AFM	P43652	599 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	NLRP12	P59046	1061 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	FAM187B	Q17R55	369 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969		Q4G0T1	1027 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	ARMCX5	Q6P1M9	558 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	SYNE3	Q6ZMZ3	975 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	GIPC2	Q8TF65	315 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	TMEM87B	Q96K49	555 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	ZMYND12	Q9H0C1	365 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	ARHGEF4	Q9NR80	690 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	CLCA2	Q9UQC9	943 aa		13.73	□□□□□ -0.21
UBR4-210	ENST00000466969	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms