RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 CCDC142Q17RM4 750 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 SOWAHAQ2M3V2 549 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 DGLUCYQ7Z3D6 616 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 CBWD2Q8IUF1 395 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 SPATA2LQ8IUW3 424 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-206ENST00000466532 KIF9Q9HAQ2 790 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 TDP1Q9NUW8 608 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 HSPBP1Q9NZL4 362 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 UXTQ9UBK9 157 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-206ENST00000466532 SPAG17Q6Q759 2223 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 DNAH14Q0VDD8 3507 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 SOBPA7XYQ1 873 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 CHURC1-FNTBB4DL54 471 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 GABRDO14764 452 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 EIF3DO15371 548 aaKnown RBP eCLIP20.54■□□□□ 0.88
COL9A3-206ENST00000466532 CUTAO60888 179 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 NOL4O94818 638 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 YEATS4O95619 227 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 HOXD13P35453 343 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 FNTBP49356 437 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 CCINQ13939 588 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 LPAL2Q16609 132 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 DPH6Q7L8W6 267 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 MON1AQ86VX9 555 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 IQUBQ8NA54 791 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 TRMT2BQ96GJ1 504 aaKnown RBP20.54■□□□□ 0.88
COL9A3-206ENST00000466532 HPDLQ96IR7 371 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 FAM83CQ9BQN1 747 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 HPS4Q9NQG7 708 aa20.54■□□□□ 0.88
COL9A3-206ENST00000466532 K7ESF4 209 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 TADA3O75528 432 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 PAPSS2O95340 614 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-206ENST00000466532 DMWDQ09019 674 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 RUNX3Q13761 415 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 DUOXA2Q1HG44 320 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 RSPO4Q2I0M5 234 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-206ENST00000466532 CFAP221Q4G0U5 840 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 FAM26FQ5R3K3 315 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 FOXD4L5Q5VV16 416 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-206ENST00000466532 TRIM68Q6AZZ1 485 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 SHC4Q6S5L8 630 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 PRR23BQ6ZRT6 265 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 SCN4BQ8IWT1 228 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 SYNPOQ8N3V7 929 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 ZNF507Q8TCN5 953 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 FOXD4L4Q8WXT5 416 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-206ENST00000466532 FUBP3Q96I24 572 aaKnown RBP eCLIP20.53■□□□□ 0.88
COL9A3-206ENST00000466532 EBF3Q9H4W6 596 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 KIAA1586Q9HCI6 787 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 DLL3Q9NYJ7 618 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 USP18Q9UMW8 372 aa20.53■□□□□ 0.88
COL9A3-206ENST00000466532 MYH10P35580 1976 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 ATP2C2O75185 946 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 ZNF268Q14587 947 aaPredicted RBP20.52■□□□□ 0.88
COL9A3-206ENST00000466532 HEATR6Q6AI08 1181 aaKnown RBP20.52■□□□□ 0.88
COL9A3-206ENST00000466532 LAIR1Q6GTX8 287 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 CC2D1AQ6P1N0 951 aaPredicted RBP20.52■□□□□ 0.88
COL9A3-206ENST00000466532 FAM171BQ6P995 826 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 EPM2AIP1Q7L775 607 aaPredicted RBP20.52■□□□□ 0.88
COL9A3-206ENST00000466532 WDR49Q8IV35 697 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 RDH13Q8NBN7 331 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 RIN3Q8TB24 985 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 KBTBD7Q8WVZ9 684 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 MYRFLQ96LU7 910 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 SYT15Q9BQS2 421 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 TRPC7Q9HCX4 862 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 C2orf42Q9NWW7 574 aa20.52■□□□□ 0.88
COL9A3-206ENST00000466532 PSMC1P62191 440 aaKnown RBP20.51■□□□□ 0.87
COL9A3-206ENST00000466532 SIM2Q14190 667 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-206ENST00000466532 SNRNP35Q16560 246 aaKnown RBP20.51■□□□□ 0.87
COL9A3-206ENST00000466532 FOXD4L6Q3SYB3 417 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-206ENST00000466532 CNNM4Q6P4Q7 775 aa20.51■□□□□ 0.87
COL9A3-206ENST00000466532 FOXD4L3Q6VB84 417 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-206ENST00000466532 C4orf50Q6ZRC1 276 aa20.51■□□□□ 0.87
COL9A3-206ENST00000466532 LIMS2Q7Z4I7 341 aa20.51■□□□□ 0.87
COL9A3-206ENST00000466532 LONP2Q86WA8 852 aa20.51■□□□□ 0.87
COL9A3-206ENST00000466532 C7orf25Q9BPX7 421 aa20.51■□□□□ 0.87
COL9A3-206ENST00000466532 MAGEF1Q9HAY2 307 aa20.51■□□□□ 0.87
COL9A3-206ENST00000466532 PARD6AQ9NPB6 346 aa20.51■□□□□ 0.87
COL9A3-206ENST00000466532 AGPAT3Q9NRZ7 376 aa20.51■□□□□ 0.87
COL9A3-206ENST00000466532 MAGEC2Q9UBF1 373 aaPredicted RBP20.51■□□□□ 0.87
COL9A3-206ENST00000466532 CDH9Q9ULB4 789 aa20.51■□□□□ 0.87
COL9A3-206ENST00000466532 OTOL1A6NHN0 477 aaPredicted RBP20.5■□□□□ 0.87
COL9A3-206ENST00000466532 POLR2DO15514 142 aaKnown RBP20.5■□□□□ 0.87
COL9A3-206ENST00000466532 TGFB1I1O43294 461 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 HRO43593 1189 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 DLATP10515 647 aaKnown RBP20.5■□□□□ 0.87
COL9A3-206ENST00000466532 ARSAP15289 507 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 TGM1P22735 817 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 LMO2P25791 158 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 CNR2P34972 360 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 MAGEA11P43364 429 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 LMNB2Q03252 620 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 SRSF5Q13243 272 aaKnown RBP20.5■□□□□ 0.87
COL9A3-206ENST00000466532 TMEM196Q5HYL7 178 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 UNC13DQ70J99 1090 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 TRAPPC11Q7Z392 1133 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 NELFCDQ8IXH7 590 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 SNX21Q969T3 373 aa20.5■□□□□ 0.87
COL9A3-206ENST00000466532 MYLPFQ96A32 169 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms