RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 KIAA1468Q9P260 1216 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 LAMA5O15230 3695 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 PDXKO00764 312 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 ZNF197O14709 1029 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 SYN3O14994 580 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 CLIC2O15247 247 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 EXTL3O43909 919 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 CSRP1P21291 193 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 TKTP29401 623 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 PRCPP42785 496 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 WDR44Q5JSH3 913 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 TCEAL6Q6IPX3 200 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 CD302Q8IX05 232 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 TRIML1Q8N9V2 468 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 ZSWIM2Q8NEG5 633 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 CSGALNACT1Q8TDX6 532 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 TCEAL3Q969E4 200 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 FAM213AQ9BRX8 229 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 C8orf33Q9H7E9 229 aaPredicted RBP12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 NEUROG3Q9Y4Z2 214 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 NUB1Q9Y5A7 615 aa12.83□□□□□ -0.36
SQSTM1-206ENST00000466342 WDR27A2RRH5 827 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 GOLGA8IPA6NC78 632 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 GOLGA8JA6NMD2 632 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 LACTBL1A8MY62 500 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 H7C4K7 107 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 ARNTLO00327 626 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 BIN1O00499 593 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 XPOTO43592 962 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 CALUO43852 315 aaPredicted RBP12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 AKAP3O75969 853 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 LRG1P02750 347 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 CCDC192P0DO97 292 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 CYP3A5P20815 502 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 PPP1R2P41236 205 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 MORC3Q14149 939 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 ZBTB6Q15916 424 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 ISM2Q6H9L7 571 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 SLC8B1Q6J4K2 584 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 SLC9A9Q8IVB4 645 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 BRSK2Q8IWQ3 736 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 SYNPOQ8N3V7 929 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 ZNF461Q8TAF7 563 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 TMEM174Q8WUU8 243 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 SMARCD2Q92925 531 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 C18orf25Q96B23 403 aaPredicted RBP12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 TCEAL4Q96EI5 215 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 SUSD3Q96L08 255 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 CORO1BQ9BR76 489 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 ASB7Q9H672 318 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 KIAA1586Q9HCI6 787 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 RBAKQ9NYW8 714 aaPredicted RBP12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 UBQLN1Q9UMX0 589 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 TRAF3IP3Q9Y228 551 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 MSRB2Q9Y3D2 182 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 CDY1Q9Y6F8 540 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 SMG1Q96Q15 3661 aaKnown RBP12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 IGSF10Q6WRI0 2623 aa12.82□□□□□ -0.36
SQSTM1-206ENST00000466342 THADAQ6YHU6 1953 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 ARHGEF37A1IGU5 675 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 ZNF233A6NK53 670 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 I3L4J1 428 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 IL18RAPO95256 599 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 NR3C1P04150 777 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 BMP6P22004 513 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 LRPAP1P30533 357 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 VIPR2P41587 438 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 PXNP49023 591 aaPredicted RBP12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 CYP2J2P51589 502 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 KPNA1P52294 538 aaPredicted RBP12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 SPAG1Q07617 926 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 STIM1Q13586 685 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 MRPL58Q14197 206 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 MYBPC2Q14324 1141 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 NFIL3Q16649 462 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 ZCWPW2Q504Y3 356 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 PDZD3Q86UT5 571 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 CBWD2Q8IUF1 395 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 XXYLT1Q8NBI6 393 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 APPL2Q8NEU8 664 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 NOC3LQ8WTT2 800 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 FAM212AQ96EL1 285 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 ZSWIM3Q96MP5 696 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 TRPV4Q9HBA0 871 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 DMAC2Q9NW81 257 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 DERAQ9Y315 318 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 C2CD2Q9Y426 696 aa12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 ASCC3Q8N3C0 2202 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-206ENST00000466342 SCN1AP35498 2009 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 MYBPHLA2RUH7 354 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 PSMA7O14818 248 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 EXOC3O60645 756 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 ABLIM3O94929 683 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 CAVIN2O95810 425 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 NFICP08651 508 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 CD44P16070 742 aaKnown RBP12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 PAX3P23760 479 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 CCR2P41597 374 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 WNT7BP56706 349 aa12.8□□□□□ -0.36
SQSTM1-206ENST00000466342 CCINQ13939 588 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms