RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 DCHS1Q96JQ0 3298 aa24.42■■□□□ 1.5
PTPN4-207ENST00000460162 GPR179Q6PRD1 2367 aa24.42■■□□□ 1.5
PTPN4-207ENST00000460162 GREB1Q4ZG55 1949 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 CYP2F1P24903 491 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 NRLP54845 237 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 BMT2Q1RMZ1 405 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 FOXD4L6Q3SYB3 417 aaPredicted RBP24.41■■□□□ 1.5
PTPN4-207ENST00000460162 RESP18Q5W5W9 173 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 TXNDC11Q6PKC3 985 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 FOXD4L3Q6VB84 417 aaPredicted RBP24.41■■□□□ 1.5
PTPN4-207ENST00000460162 MAB21L3Q8N8X9 362 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 STKLD1Q8NE28 680 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 KBTBD7Q8WVZ9 684 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 MYRFLQ96LU7 910 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 SMG9Q9H0W8 520 aaKnown RBP24.41■■□□□ 1.5
PTPN4-207ENST00000460162 CFAP45Q9UL16 551 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 PCDHA7Q9UN72 937 aa24.41■■□□□ 1.5
PTPN4-207ENST00000460162 MAGED2Q9UNF1 606 aaPredicted RBP24.41■■□□□ 1.5
PTPN4-207ENST00000460162 MAGEA11P43364 429 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 ID4P47928 161 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 FOXK2Q01167 660 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 DDR2Q16832 855 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 ITPRIPL2Q3MIP1 535 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 DGKKQ5KSL6 1271 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 FAM171BQ6P995 826 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 C4orf50Q6ZRC1 276 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 SPEM1Q8N4L4 309 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 XXYLT1Q8NBI6 393 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 CGRRF1Q99675 332 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 SYT15Q9BQS2 421 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 CGNQ9P2M7 1197 aaKnown RBP24.4■■□□□ 1.5
PTPN4-207ENST00000460162 CDH9Q9ULB4 789 aa24.4■■□□□ 1.5
PTPN4-207ENST00000460162 SMG5Q9UPR3 1016 aaKnown RBP24.4■■□□□ 1.5
PTPN4-207ENST00000460162 PVALEFA0A1B0GWK0 134 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 HCRTO43612 131 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 TADA3O75528 432 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 DLATP10515 647 aaKnown RBP24.39■■□□□ 1.49
PTPN4-207ENST00000460162 TNK2Q07912 1038 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 CYP24A1Q07973 514 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 GAS6Q14393 721 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 ZNF268Q14587 947 aaPredicted RBP24.39■■□□□ 1.49
PTPN4-207ENST00000460162 PSMD6Q15008 389 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 MAPRE1Q15691 268 aaKnown RBP24.39■■□□□ 1.49
PTPN4-207ENST00000460162 CCDC142Q17RM4 750 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 SDHAF4Q5VUM1 108 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 TRAPPC11Q7Z392 1133 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 MON1AQ86VX9 555 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 NELFCDQ8IXH7 590 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 C12orf56Q8IXR9 622 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 KIAA2013Q8IYS2 634 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 USP13Q92995 863 aaPredicted RBP24.39■■□□□ 1.49
PTPN4-207ENST00000460162 FNBP1Q96RU3 617 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 BLZF1Q9H2G9 400 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 TDP1Q9NUW8 608 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 NCDNQ9UBB6 729 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 HELZP42694 1942 aaKnown RBP24.39■■□□□ 1.49
PTPN4-207ENST00000460162 ANAPC1Q9H1A4 1944 aa24.39■■□□□ 1.49
PTPN4-207ENST00000460162 PAPSS2O95340 614 aaPredicted RBP24.38■■□□□ 1.49
PTPN4-207ENST00000460162 TNNI1P19237 187 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 WARSP23381 471 aaKnown RBP24.38■■□□□ 1.49
PTPN4-207ENST00000460162 CXCL12P48061 93 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 CYP2J2P51589 502 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 PKP1Q13835 747 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 TXNDC8Q6A555 127 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 TTC8Q8TAM2 541 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 MYLPFQ96A32 169 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 CEP295NLQ96MC4 621 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 FAM83CQ9BQN1 747 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 CCL26Q9Y258 94 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 CACNA1AO00555 2505 aa24.38■■□□□ 1.49
PTPN4-207ENST00000460162 CLIC2O15247 247 aa24.37■■□□□ 1.49
PTPN4-207ENST00000460162 CASP1P29466 404 aa24.37■■□□□ 1.49
PTPN4-207ENST00000460162 PSMC1P62191 440 aaKnown RBP24.37■■□□□ 1.49
PTPN4-207ENST00000460162 SATB1Q01826 763 aa24.37■■□□□ 1.49
PTPN4-207ENST00000460162 CCINQ13939 588 aa24.37■■□□□ 1.49
PTPN4-207ENST00000460162 WDR44Q5JSH3 913 aa24.37■■□□□ 1.49
PTPN4-207ENST00000460162 VSTM1Q6UX27 236 aa24.37■■□□□ 1.49
PTPN4-207ENST00000460162 ERMP1Q7Z2K6 904 aa24.37■■□□□ 1.49
PTPN4-207ENST00000460162 CEP57L1Q8IYX8 460 aa24.37■■□□□ 1.49
PTPN4-207ENST00000460162 SYNPOQ8N3V7 929 aa24.37■■□□□ 1.49
PTPN4-207ENST00000460162 RDH13Q8NBN7 331 aa24.37■■□□□ 1.49
PTPN4-207ENST00000460162 SECISBP2LQ93073 1101 aaKnown RBP24.37■■□□□ 1.49
PTPN4-207ENST00000460162 RBM12Q9NTZ6 932 aaKnown RBP24.37■■□□□ 1.49
PTPN4-207ENST00000460162 AFMP43652 599 aa24.36■■□□□ 1.49
PTPN4-207ENST00000460162 DNM1Q05193 864 aaKnown RBP24.36■■□□□ 1.49
PTPN4-207ENST00000460162 CUL4BQ13620 913 aa24.36■■□□□ 1.49
PTPN4-207ENST00000460162 PON2Q15165 354 aa24.36■■□□□ 1.49
PTPN4-207ENST00000460162 Q6ZS52 159 aa24.36■■□□□ 1.49
PTPN4-207ENST00000460162 SCN4BQ8IWT1 228 aa24.36■■□□□ 1.49
PTPN4-207ENST00000460162 DCLK2Q8N568 766 aa24.36■■□□□ 1.49
PTPN4-207ENST00000460162 MMS19Q96T76 1030 aa24.36■■□□□ 1.49
PTPN4-207ENST00000460162 SLC39A2Q9NP94 309 aa24.36■■□□□ 1.49
PTPN4-207ENST00000460162 CRTAC1Q9NQ79 661 aa24.36■■□□□ 1.49
PTPN4-207ENST00000460162 GKN1Q9NS71 199 aa24.36■■□□□ 1.49
PTPN4-207ENST00000460162 MAGEC2Q9UBF1 373 aaPredicted RBP24.36■■□□□ 1.49
PTPN4-207ENST00000460162 CEP250Q9BV73 2442 aa24.35■■□□□ 1.49
PTPN4-207ENST00000460162 ATP2C2O75185 946 aa24.35■■□□□ 1.49
PTPN4-207ENST00000460162 TACC1O75410 805 aa24.35■■□□□ 1.49
PTPN4-207ENST00000460162 STAU1O95793 577 aaKnown RBP24.35■■□□□ 1.49
PTPN4-207ENST00000460162 LMO2P25791 158 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms