RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 SAP30BPQ9UHR5 308 aaKnown RBP5.83□□□□□ -1.48
VPS41-209ENST00000457055 TRHDEQ9UKU6 1024 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 RIMKLBQ9ULI2 386 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 ARHGAP23Q9P227 1491 aa5.83□□□□□ -1.48
VPS41-209ENST00000457055 CEP152O94986 1710 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 DHX29Q7Z478 1369 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 PNPLA6Q8IY17 1366 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 TET3O43151 1660 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 ZNF644Q9H582 1327 aaPredicted RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 TRIM75PA6NK02 468 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 C22orf46C9J442 243 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 EBAG9O00559 213 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 SMAD7O15105 426 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 PLSCR1O15162 318 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 TTI1O43156 1089 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 TSPAN1O60635 241 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 SNUPNO95149 360 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 GOSR1O95249 250 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 ADCY5O95622 1261 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 ITGB1P05556 798 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 CKBP12277 381 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 HDCP19113 662 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 MCM5P33992 734 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 ALDH5A1P51649 535 aaPredicted RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 GPR85P60893 370 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 BASP1P80723 227 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 GRSF1Q12849 480 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS41-209ENST00000457055 PRKG1Q13976 671 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 SPARCL1Q14515 664 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 TERF2Q15554 542 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 STK11Q15831 433 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 SUPT20HL1Q3ZLR7 823 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 CCDC38Q502W7 563 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 CEP55Q53EZ4 464 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 DCAF17Q5H9S7 520 aaPredicted RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 FAM26FQ5R3K3 315 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 EMC10Q5UCC4 262 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 GTF2IRD2BQ6EKJ0 949 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 SLC30A6Q6NXT4 461 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 DNAJB7Q7Z6W7 309 aaPredicted RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 STRA8Q7Z7C7 330 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 GALNT7Q86SF2 657 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 GTF2IRD2Q86UP8 949 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 LRRTM3Q86VH5 581 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 UNC45BQ8IWX7 931 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 CCDC170Q8IYT3 715 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 LRRC47Q8N1G4 583 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 TTLL6Q8N841 843 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 ANKRD53Q8N9V6 530 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 SUPT20HQ8NEM7 779 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 IL17RDQ8NFM7 739 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 OR6C4Q8NGE1 309 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 DIS3LQ8TF46 1054 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 CENPIQ92674 756 aaPredicted RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 LRRC59Q96AG4 307 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 DHX58Q96C10 678 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 UBXN10Q96LJ8 280 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 SAMD11Q96NU1 681 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 NT5C1BQ96P26 610 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 NAA15Q9BXJ9 866 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 TSGA10Q9BZW7 698 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 TRPV6Q9H1D0 765 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 AGO4Q9HCK5 861 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 AATFQ9NY61 560 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS41-209ENST00000457055 IFT80Q9P2H3 777 aaPredicted RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 DDX20Q9UHI6 824 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 MOSPD1Q9UJG1 213 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 PTBP2Q9UKA9 531 aaKnown RBP5.82□□□□□ -1.48
VPS41-209ENST00000457055 ATRNO75882 1429 aa5.82□□□□□ -1.48
VPS41-209ENST00000457055 PIK3C2BO00750 1634 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 MYO5BQ9ULV0 1848 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 SLIT1O75093 1534 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 GPR75-ASB3A0A0A6YYF3 556 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 CTAGE9A4FU28 777 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 B4E171 279 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 SOCS5O75159 536 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 GLRX3O76003 335 aaKnown RBP5.81□□□□□ -1.48
VPS41-209ENST00000457055 OPN1MWP04001 364 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 OPN1MW2P0DN77 364 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 OPN1MW3P0DN78 364 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 MYCLP12524 364 aaPredicted RBP5.81□□□□□ -1.48
VPS41-209ENST00000457055 TNFRSF1AP19438 455 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 TFEBP19484 476 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 SOX6P35712 828 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 TCF7P36402 384 aaPredicted RBP5.81□□□□□ -1.48
VPS41-209ENST00000457055 SLC6A11P48066 632 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 IFNAR2P48551 515 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 CLCN2P51788 898 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 TKTL1P51854 596 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 ZNF143P52747 638 aaPredicted RBP5.81□□□□□ -1.48
VPS41-209ENST00000457055 ITGA1P56199 1179 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 CCNA1P78396 465 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 DPYSQ14117 519 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 MEA1Q16626 185 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 TLDC1Q6P9B6 456 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 BORAQ6PGQ7 559 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 NUP54Q7Z3B4 507 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 STK32CQ86UX6 486 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 FAM124AQ86V42 546 aa5.81□□□□□ -1.48
VPS41-209ENST00000457055 TRIM59Q8IWR1 403 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms