RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 FUBP3Q96I24 572 aaKnown RBP eCLIP13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 MKNK1Q9BUB5 465 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 GTPBP4Q9BZE4 634 aaKnown RBP13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 SDCBP2Q9H190 292 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 DPEP3Q9H4B8 488 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 SLITRK6Q9H5Y7 841 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 SMYD3Q9H7B4 428 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 TRPV4Q9HBA0 871 aa13.61□□□□□ -0.23
PRPF40A-203ENST00000448428 TRIM49BA6NDI0 452 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 A8MXQ7 604 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 CLSTN1O94985 981 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 ASS1P00966 412 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 F11P03951 625 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 CSH1P0DML2 217 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 CSH2P0DML3 217 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 CD44P16070 742 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 BMP6P22004 513 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 BDNFP23560 247 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 PIK3CAP42336 1068 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 MAGEA11P43364 429 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 NLRP12P59046 1061 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 UBE2HP62256 183 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 CYP4F8P98187 520 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 FKBP3Q00688 224 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 CYP27A1Q02318 531 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 GRM2Q14416 872 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 MAPRE1Q15691 268 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 ARHGAP15Q53QZ3 475 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 MDH1BQ5I0G3 518 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 GPR158Q5T848 1215 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 CWF19L1Q69YN2 538 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 SPOPLQ6IQ16 392 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 VITQ6UXI7 678 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 ARID3BQ8IVW6 561 aaPredicted RBP13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 ZC3H3Q8IXZ2 948 aaKnown RBP13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 TAS1R2Q8TE23 839 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 NUP210Q8TEM1 1887 aaPredicted RBP13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 TAF4BQ92750 862 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 RSPRY1Q96DX4 576 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 DHTKD1Q96HY7 919 aaPredicted RBP13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 TSG101Q99816 390 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 KCNH6Q9H252 994 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 MMRN2Q9H8L6 949 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.6□□□□□ -0.239e-7■■■■■ 53.2
PRPF40A-203ENST00000448428 ARHGEF3Q9NR81 526 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 MAGED2Q9UNF1 606 aaPredicted RBP13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 ANAPC1Q9H1A4 1944 aa13.6□□□□□ -0.23
PRPF40A-203ENST00000448428 SLC38A8A6NNN8 435 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 PPP1R3GB7ZBB8 358 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 STK25O00506 426 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 LRRN2O75325 713 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 NOL4O94818 638 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 EPB41P11171 864 aaKnown RBP13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 PSMC3P17980 439 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 CCNE1P24864 410 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 CDC25CP30307 473 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 GRIK1P39086 918 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 LRRC63Q05C16 580 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 MORC3Q14149 939 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 SLC44A4Q53GD3 710 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 VSTM1Q6UX27 236 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 SCARA5Q6ZMJ2 495 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 MFSD6LQ8IWD5 586 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 B3GALNT2Q8NCR0 500 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 MYRFLQ96LU7 910 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 TRMT61BQ9BVS5 477 aaKnown RBP13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 SLC46A2Q9BY10 475 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 B3GNT5Q9BYG0 378 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 TASP1Q9H6P5 420 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 TBC1D17Q9HA65 648 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 TMEM8AQ9HCN3 771 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 COL4A3Q01955 1670 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 NCANO14594 1321 aa13.59□□□□□ -0.23
PRPF40A-203ENST00000448428 HEPACAM2A8MVW5 462 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 BIN1O00499 593 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 CLDN5O00501 218 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 PSMA7O14818 248 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 P4HA1P13674 534 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 AOC1P19801 751 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 GTF2H1P32780 548 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 ASPAP45381 313 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 STARD6P59095 220 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 PFKPQ01813 784 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 STIM1Q13586 685 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 KRT39Q6A163 491 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 PHLDB3Q6NSJ2 640 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 PRSS33Q8NF86 280 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 E2F7Q96AV8 911 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 TRMT2BQ96GJ1 504 aaKnown RBP13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 SPATA17Q96L03 361 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 LRRC3BQ96PB8 259 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 GCNAQ96QF7 691 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 BRD9Q9H8M2 597 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 APOBEC3GQ9HC16 384 aaKnown RBP13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 TICRRQ7Z2Z1 1910 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 MYH10P35580 1976 aa13.58□□□□□ -0.24
PRPF40A-203ENST00000448428 ZDBF2Q9HCK1 2354 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 SLC16A3O15427 465 aaKnown RBP13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 WEE1P30291 646 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 GDI1P31150 447 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms