RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TRAIPQ9BWF2 469 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 MUC3BQ9H195 1237 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 MID2Q9UJV3 735 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 FBXL5Q9UKA1 691 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 PCDHB12Q9Y5F1 795 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 C3orf70A6NLC5 250 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 B4GALT5O43286 388 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 PSTPIP1O43586 416 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 MLH1P40692 756 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 RASSF2P50749 326 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 CRYBB1P53674 252 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 MIB1Q86YT6 1006 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 MSL3Q8N5Y2 521 aaKnown RBP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 EMC1Q8N766 993 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 RAPGEF5Q92565 580 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 KCTD10Q9H3F6 313 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 COPEO14579 308 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 SUN1O94901 812 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 FBXO21O94952 628 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 SLC2A3P11169 496 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 TNFSF9P41273 254 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 SCNN1GP51170 649 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 TKTL1P51854 596 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 BMT2Q1RMZ1 405 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 KCNT1Q5JUK3 1230 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 TMC7Q7Z402 723 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 SLC13A5Q86YT5 568 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 ATP6V0D2Q8N8Y2 350 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 FAM172AQ8WUF8 416 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 MRPL9Q9BYD2 267 aaKnown RBP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 SIK3Q9Y2K2 1263 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 STRCP1A6NGW2 1772 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 NWD2Q9ULI1 1742 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 TGFB1I1O43294 461 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 NFICP08651 508 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 YBX3P16989 372 aaKnown RBP eCLIP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 GRK4P32298 578 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 CCT5P48643 541 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 ZSCAN26Q16670 478 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 NUDT18Q6ZVK8 323 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 SIAH1Q8IUQ4 282 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 DEFB118Q96PH6 123 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 UMODL1Q5DID0 1318 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 RAD51CO43502 376 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 CA12O43570 354 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 F9P00740 461 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 ITIH2P19823 946 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 GGCXP38435 758 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 C1QBPQ07021 282 aaKnown RBP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 TBX2Q13207 712 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 EEF1DP3Q658K8 133 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 JAMLQ86YT9 394 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 ANKMY2Q8IV38 441 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 SRRM1Q8IYB3 904 aaKnown RBP7.75□□□□□ -1.17
SYNE1-213ENST00000448038 MCOLN2Q8IZK6 566 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 RXFP2Q8WXD0 754 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 CNPY3Q9BT09 278 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 ST3GAL5Q9UNP4 418 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 COL1A2P08123 1366 aa7.75□□□□□ -1.17
SYNE1-213ENST00000448038 MYH2Q9UKX2 1941 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 A0A0A6YYK5 440 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-213ENST00000448038 ADAMTS3O15072 1205 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 TLR2O60603 784 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 AMHP03971 560 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 IKBKEQ14164 716 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 ARHGAP15Q53QZ3 475 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 SPATA20Q8TB22 786 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 KAT5Q92993 513 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 EXT2Q93063 718 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 DUSP11O75319 330 aaKnown RBP7.74□□□□□ -1.17
SYNE1-213ENST00000448038 MICAL2O94851 1124 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 PAEPP09466 180 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 CENPCQ03188 943 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 MIIPQ5JXC2 388 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 C10orf67Q8IYJ2 551 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 VPS11Q9H270 941 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 TPX2Q9ULW0 747 aaKnown RBP7.74□□□□□ -1.17
SYNE1-213ENST00000448038 FIS1Q9Y3D6 152 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 COL18A1P39060 1754 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 CNTNAP2Q9UHC6 1331 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 SMIM35A0A1B0GVV1 85 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 PROSCO94903 275 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 CD52P31358 61 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 SLC11A2P49281 568 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 CCL23P55773 120 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 NR1H3Q13133 447 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 ITGA7Q13683 1181 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 COBLL1Q53SF7 1204 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 FAM131BQ86XD5 332 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 IFNL1Q8IU54 200 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 RUBCNQ92622 972 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 MRPS31Q92665 395 aaKnown RBP7.74□□□□□ -1.17
SYNE1-213ENST00000448038 SENP8Q96LD8 212 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 PAK5Q9P286 719 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 ZNF112Q9UJU3 913 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 PCDHB5Q9Y5E4 795 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 BTAF1O14981 1849 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 DDX3XO00571 662 aaKnown RBP eCLIP7.74□□□□□ -1.17
SYNE1-213ENST00000448038 SMPD1P17405 629 aa7.74□□□□□ -1.17
SYNE1-213ENST00000448038 KCNA3P22001 575 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms