RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 CCR2P41597 374 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 ASIC1P78348 528 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 GRSF1Q12849 480 aaKnown RBP eCLIP8.34□□□□□ -1.07
CD44-211ENST00000442151 ZNF268Q14587 947 aaPredicted RBP8.34□□□□□ -1.07
CD44-211ENST00000442151 PUM1Q14671 1186 aaKnown RBP eCLIP8.34□□□□□ -1.07
CD44-211ENST00000442151 PDGFRLQ15198 375 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 ITPRIPL2Q3MIP1 535 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 VSTM1Q6UX27 236 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 CRELD2Q6UXH1 353 aaPredicted RBP8.34□□□□□ -1.07
CD44-211ENST00000442151 USP49Q70CQ1 688 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 WDR49Q8IV35 697 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 CEP57L1Q8IYX8 460 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 ZBTB44Q8NCP5 570 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 ZNF507Q8TCN5 953 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 ZSWIM3Q96MP5 696 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 C7orf25Q9BPX7 421 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 DNAJC25Q9H1X3 360 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 SNX25Q9H3E2 840 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 KBTBD4Q9NVX7 518 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 ABI2Q9NYB9 513 aaPredicted RBP8.34□□□□□ -1.07
CD44-211ENST00000442151 CDH9Q9ULB4 789 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 MYBPHLA2RUH7 354 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 LRP3O75074 770 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 USP17L7P0C7H9 530 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 CCNE1P24864 410 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 ADSSP30520 456 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 MAGEA11P43364 429 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 PSMD2Q13200 908 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 TRPC3Q13507 836 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 UNC13DQ70J99 1090 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 MON1AQ86VX9 555 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 CMTM8Q8IZV2 173 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 PDILTQ8N807 584 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 SAAL1Q96ER3 474 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 TRMT2BQ96GJ1 504 aaKnown RBP8.33□□□□□ -1.08
CD44-211ENST00000442151 HPDLQ96IR7 371 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 PRMT8Q9NR22 394 aaPredicted RBP8.33□□□□□ -1.08
CD44-211ENST00000442151 INTS13Q9NVM9 706 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 ATP6V1DQ9Y5K8 247 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 SNX9Q9Y5X1 595 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 MYH15Q9Y2K3 1946 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 ATP8B3O60423 1300 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 MIA3Q5JRA6 1907 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 TRAV19A0A0A6YYK7 116 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 SPECC1L-ADORA2AF8WAN1 911 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 TRIM66O15016 1216 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 LILRB5O75023 590 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 PAPSS2O95340 614 aaPredicted RBP8.33□□□□□ -1.08
CD44-211ENST00000442151 MYL1P05976 194 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 P4HA1P13674 534 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 GJA1P17302 382 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 TNNI1P19237 187 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 DRD1P21728 446 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 CD72P21854 359 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 HOXA6P31267 233 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 ATICP31939 592 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 NLRP12P59046 1061 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 CFAP221Q4G0U5 840 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 FBXO43Q4G163 708 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 PREPLQ4J6C6 727 aaPredicted RBP8.33□□□□□ -1.08
CD44-211ENST00000442151 INTS6LQ5JSJ4 861 aaKnown RBP8.33□□□□□ -1.08
CD44-211ENST00000442151 FAM26FQ5R3K3 315 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 GAREM2Q75VX8 874 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 EFCAB13Q8IY85 973 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 ADGRF2Q8IZF7 708 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 PDCL2Q8N4E4 241 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 CPA6Q8N4T0 437 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 C1orf127Q8N9H9 656 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 XXYLT1Q8NBI6 393 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 ST13P5Q8NFI4 369 aaPredicted RBP8.33□□□□□ -1.08
CD44-211ENST00000442151 OR10T2Q8NGX3 314 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 GIPC2Q8TF65 315 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 NELL1Q92832 810 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 SYAP1Q96A49 352 aaPredicted RBP8.33□□□□□ -1.08
CD44-211ENST00000442151 DHX58Q96C10 678 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 MYRFLQ96LU7 910 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 EPC1Q9H2F5 836 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 PCIF1Q9H4Z3 704 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 GKN1Q9NS71 199 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 TDP1Q9NUW8 608 aa8.33□□□□□ -1.08
CD44-211ENST00000442151 TFIP11Q9UBB9 837 aaKnown RBP8.33□□□□□ -1.08
CD44-211ENST00000442151 MTF2Q9Y483 593 aaPredicted RBP8.33□□□□□ -1.08
CD44-211ENST00000442151 CCDC163A0A0D9SF12 145 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 GOLGA8IPA6NC78 632 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 GOLGA8JA6NMD2 632 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 SLC9A3R1O14745 358 aaPredicted RBP8.32□□□□□ -1.08
CD44-211ENST00000442151 PPEF2O14830 753 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 PHACTR2O75167 634 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 NOL4O94818 638 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 F11P03951 625 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 ZSCAN22P10073 491 aaPredicted RBP8.32□□□□□ -1.08
CD44-211ENST00000442151 CHRNB1P11230 501 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 ME1P48163 572 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 IFNAR2P48551 515 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 TNNC1P63316 161 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 LMNB2Q03252 620 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 MTAPQ13126 283 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 RUNX3Q13761 415 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 LAIR1Q6GTX8 287 aa8.32□□□□□ -1.08
CD44-211ENST00000442151 PACS2Q86VP3 889 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms