RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 AFPP02771 609 aaKnown RBP19.88■□□□□ 0.77
SHH-203ENST00000435425 GRIK1P39086 918 aa19.88■□□□□ 0.77
SHH-203ENST00000435425 MTIF2P46199 727 aaKnown RBP19.88■□□□□ 0.77
SHH-203ENST00000435425 MARSP56192 900 aaKnown RBP19.88■□□□□ 0.77
SHH-203ENST00000435425 RPL10AP62906 217 aaKnown RBP19.88■□□□□ 0.77
SHH-203ENST00000435425 PRSS36Q5K4E3 855 aa19.88■□□□□ 0.77
SHH-203ENST00000435425 CAVIN1Q6NZI2 390 aaKnown RBP19.88■□□□□ 0.77
SHH-203ENST00000435425 RSAD2Q8WXG1 361 aa19.88■□□□□ 0.77
SHH-203ENST00000435425 FUBP3Q96I24 572 aaKnown RBP eCLIP19.88■□□□□ 0.77
SHH-203ENST00000435425 TNIP3Q96KP6 325 aa19.88■□□□□ 0.77
SHH-203ENST00000435425 B3GNT5Q9BYG0 378 aa19.88■□□□□ 0.77
SHH-203ENST00000435425 CYP3A43Q9HB55 503 aa19.88■□□□□ 0.77
SHH-203ENST00000435425 MAGED2Q9UNF1 606 aaPredicted RBP19.88■□□□□ 0.77
SHH-203ENST00000435425 COQ4Q9Y3A0 265 aa19.88■□□□□ 0.77
SHH-203ENST00000435425 NRG2O14511 850 aaPredicted RBP19.87■□□□□ 0.77
SHH-203ENST00000435425 DCXO43602 365 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 CETN1Q12798 172 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 MTMR3Q13615 1198 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 CFAP221Q4G0U5 840 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 TMC8Q8IU68 726 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 IRF2BP1Q8IU81 584 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 NPAS3Q8IXF0 933 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 LEMD2Q8NC56 503 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 ARID3AQ99856 593 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 LRRC3Q9BY71 257 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 ZNF518BQ9C0D4 1074 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 AVENQ9NQS1 362 aaPredicted RBP19.87■□□□□ 0.77
SHH-203ENST00000435425 EPS15L1Q9UBC2 864 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 VCANP13611 3396 aa19.87■□□□□ 0.77
SHH-203ENST00000435425 A0A1W2PRU2 124 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 ALADP13716 330 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 GABRR2P28476 465 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 TEAD2Q15562 447 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 PTPN21Q16825 1174 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 ZNF394Q53GI3 561 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 UNC93AQ86WB7 457 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 TWNKQ96RR1 684 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 ATXN3LQ9H3M9 355 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 THAP9Q9H5L6 903 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 KCNK12Q9HB15 430 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 FAM49BQ9NUQ9 324 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 ANO10Q9NW15 660 aa19.86■□□□□ 0.77
SHH-203ENST00000435425 ZFP37Q9Y6Q3 630 aaPredicted RBP19.86■□□□□ 0.77
SHH-203ENST00000435425 SLC38A8A6NNN8 435 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 PI4K2BG5E9Z4 385 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 MOSPD3O75425 235 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 CCDC130P13994 396 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 ANXA13P27216 316 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 MAGEA11P43364 429 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 EPHA5P54756 1037 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 INCA1Q0VD86 236 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 STX1AQ16623 288 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 POTEHQ6S545 545 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 C11orf57Q6ZUT1 292 aaPredicted RBP19.85■□□□□ 0.77
SHH-203ENST00000435425 FAM114A1Q8IWE2 563 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 C12orf29Q8N999 325 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 SHKBP1Q8TBC3 707 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 NT5C1AQ9BXI3 368 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 ELOVL4Q9GZR5 314 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 SMOC2Q9H3U7 446 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 SLITRK6Q9H5Y7 841 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 CISHQ9NSE2 258 aa19.85■□□□□ 0.77
SHH-203ENST00000435425 GREB1Q4ZG55 1949 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 P4HA2O15460 535 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 CILPO75339 1184 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 CSH1P0DML2 217 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 CSH2P0DML3 217 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 TRIM21P19474 475 aaKnown RBP19.84■□□□□ 0.77
SHH-203ENST00000435425 ADORA2BP29275 332 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 CACNA2D1P54289 1103 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 CUL2Q13617 745 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 CT47A1Q5JQC4 288 aaPredicted RBP19.84■□□□□ 0.77
SHH-203ENST00000435425 PARM1Q6UWI2 310 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 VSTM1Q6UX27 236 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 GAREM2Q75VX8 874 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 CRYBG2Q8N1P7 616 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 EHBP1Q8NDI1 1231 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 WHAMMQ8TF30 809 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 ZSWIM3Q96MP5 696 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 NT5C1BQ96P26 610 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 GCNAQ96QF7 691 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 SAMSN1Q9NSI8 373 aaKnown RBP19.84■□□□□ 0.77
SHH-203ENST00000435425 SORCS3Q9UPU3 1222 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 NUMBLQ9Y6R0 609 aa19.84■□□□□ 0.77
SHH-203ENST00000435425 ATP8B3O60423 1300 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 DENND4CQ5VZ89 1909 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 F8VP50 259 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 TRIM66O15016 1216 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 PMM2O15305 246 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 HMGA1P17096 107 aaKnown RBP19.83■□□□□ 0.77
SHH-203ENST00000435425 ZXDAP98168 799 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 CYP4F8P98187 520 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 STXBP5Q5T5C0 1151 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 PAQR9Q6ZVX9 377 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 FAM35AQ86V20 835 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 GPIHBP1Q8IV16 184 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 PPM1KQ8N3J5 372 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 SLC2A14Q8TDB8 520 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 FGF14Q92915 247 aa19.83■□□□□ 0.77
SHH-203ENST00000435425 FAXDC2Q96IV6 333 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms