RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 PIP5K1BO14986 540 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 NPC1O15118 1278 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 TRIM24O15164 1050 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 GLP2RO95838 553 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 DHRS4L1P0CG22 281 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 EGR1P18146 543 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 ITGA8P53708 1063 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 LILRA4P59901 499 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 RNASE9P60153 205 aaKnown RBP6.97□□□□□ -1.29
USP54-206ENST00000433394 HSD11B2P80365 405 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 FPGSQ05932 587 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.97□□□□□ -1.29
USP54-206ENST00000433394 TAF2Q6P1X5 1199 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 KLHL17Q6TDP4 642 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 CRTC1Q6UUV9 634 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 ZDHHC24Q6UX98 284 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 GALNT15Q8N3T1 639 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 GLIS1Q8NBF1 620 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 FEZF2Q8TBJ5 459 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 IPO4Q8TEX9 1081 aaKnown RBP6.97□□□□□ -1.29
USP54-206ENST00000433394 FAM167BQ9BTA0 163 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 PTDSS2Q9BVG9 487 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 PCDHAC1Q9H158 963 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 MAGEH1Q9H213 219 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 CAPN11Q9UMQ6 739 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 CDY1Q9Y6F8 540 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 DUSP10Q9Y6W6 482 aa6.97□□□□□ -1.29
USP54-206ENST00000433394 F5H697 171 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 ACKR2O00590 384 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 FOXS1O43638 330 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 SNX2O60749 519 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 PRSS23O95084 383 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 C8AP07357 584 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 ZSCAN22P10073 491 aaPredicted RBP6.96□□□□□ -1.3
USP54-206ENST00000433394 FGFR4P22455 802 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 GABRB3P28472 473 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 APOBEC3AP31941 199 aaPredicted RBP6.96□□□□□ -1.3
USP54-206ENST00000433394 SERPINF1P36955 418 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 MTHFSP49914 203 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 ANXA11P50995 505 aaKnown RBP6.96□□□□□ -1.3
USP54-206ENST00000433394 ARL4CP56559 192 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 RPS7P62081 194 aaKnown RBP6.96□□□□□ -1.3
USP54-206ENST00000433394 NSUN2Q08J23 767 aaKnown RBP eCLIP6.96□□□□□ -1.3
USP54-206ENST00000433394 ADCK5Q3MIX3 580 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 ZFYVE27Q5T4F4 411 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 FAM102AQ5T9C2 384 aaPredicted RBP6.96□□□□□ -1.3
USP54-206ENST00000433394 ERICH6BQ5W0A0 696 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 ARMC6Q6NXE6 501 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 TMEM108Q6UXF1 575 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 GDF7Q7Z4P5 450 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 MAPKAPK5Q8IW41 473 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 CCDC117Q8IWD4 279 aaPredicted RBP6.96□□□□□ -1.3
USP54-206ENST00000433394 COLGALT2Q8IYK4 626 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 NSUN7Q8NE18 718 aaKnown RBP6.96□□□□□ -1.3
USP54-206ENST00000433394 POC1BQ8TC44 478 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 BPIFB1Q8TDL5 484 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 SNX19Q92543 992 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 PPP2R3CQ969Q6 453 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 TBC1D20Q96BZ9 403 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 GRAMD1AQ96CP6 724 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 C18orf8Q96DM3 657 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 CASS4Q9NQ75 786 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 HELLSQ9NRZ9 838 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 AURKAIP1Q9NWT8 199 aaPredicted RBP6.96□□□□□ -1.3
USP54-206ENST00000433394 TRPM5Q9NZQ8 1165 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 KCNE5Q9UJ90 142 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 ZMYND8Q9ULU4 1186 aaPredicted RBP6.96□□□□□ -1.3
USP54-206ENST00000433394 PCDHGB3Q9Y5G1 929 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 FPGT-TNNI3KV9GXZ4 949 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 SPATA31A3Q5VYP0 1347 aa6.96□□□□□ -1.3
USP54-206ENST00000433394 MYADML2A6NDP7 307 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 LEFTY2O00292 366 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 KCNQ3O43525 872 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 RRP9O43818 475 aaKnown RBP6.95□□□□□ -1.3
USP54-206ENST00000433394 RPS6KA4O75676 772 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 SCAF4O95104 1147 aaKnown RBP6.95□□□□□ -1.3
USP54-206ENST00000433394 CD53P19397 219 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 ACO1P21399 889 aaKnown RBP6.95□□□□□ -1.3
USP54-206ENST00000433394 CFPP27918 469 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 CD6P30203 668 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 PPIFP30405 207 aaKnown RBP6.95□□□□□ -1.3
USP54-206ENST00000433394 ATICP31939 592 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 NDUFV1P49821 464 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 ALDH18A1P54886 795 aaKnown RBP6.95□□□□□ -1.3
USP54-206ENST00000433394 HLXQ14774 488 aaPredicted RBP6.95□□□□□ -1.3
USP54-206ENST00000433394 MMS22LQ6ZRQ5 1243 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 SYT12Q8IV01 421 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 SLC15A3Q8IY34 581 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 SLC46A2Q9BY10 475 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 SLC25A32Q9H2D1 315 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 HERC5Q9UII4 1024 aaKnown RBP6.95□□□□□ -1.3
USP54-206ENST00000433394 SORCS3Q9UPU3 1222 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 TCAF1Q9Y4C2 921 aa6.95□□□□□ -1.3
USP54-206ENST00000433394 PRAMEF33A0A0G2JMD5 474 aa6.94□□□□□ -1.3
USP54-206ENST00000433394 TRIM38O00635 465 aa6.94□□□□□ -1.3
USP54-206ENST00000433394 PRAMEF10O60809 474 aa6.94□□□□□ -1.3
USP54-206ENST00000433394 SRGAP2O75044 1071 aa6.94□□□□□ -1.3
USP54-206ENST00000433394 ZNF623O75123 536 aa6.94□□□□□ -1.3
USP54-206ENST00000433394 PPFIA4O75335 1185 aa6.94□□□□□ -1.3
USP54-206ENST00000433394 NPTX2P47972 431 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms