RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 SGPL1O95470 568 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 NDST1P52848 882 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 PIGHQ14442 188 aaPredicted RBP13.56□□□□□ -0.24
PTCH1-207ENST00000429896 USP41Q3LFD5 358 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 MMEL1Q495T6 779 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 MAMDC4Q6UXC1 1216 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 TRIM59Q8IWR1 403 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.56□□□□□ -0.24
PTCH1-207ENST00000429896 FOXN3O00409 490 aaPredicted RBP13.56□□□□□ -0.24
PTCH1-207ENST00000429896 CAND2O75155 1236 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 SLC2A3P11169 496 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 SERPINB6P35237 376 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 RABGGTAQ92696 567 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 TTC1Q99614 292 aa13.56□□□□□ -0.24
PTCH1-207ENST00000429896 ZMYND10O75800 440 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 TNFSF9P41273 254 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 EEF1DP3Q658K8 133 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 CROCCP2Q86T23 111 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 ATP6V0D2Q8N8Y2 350 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 CA4P22748 312 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 TUFMP49411 452 aaKnown RBP13.55□□□□□ -0.24
PTCH1-207ENST00000429896 NR1H3Q13133 447 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 MORN1Q5T089 497 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 RASSF4Q9H2L5 321 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.55□□□□□ -0.24
PTCH1-207ENST00000429896 TSR3Q9UJK0 312 aaKnown RBP13.55□□□□□ -0.24
PTCH1-207ENST00000429896 CDC23Q9UJX2 597 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 C2CD2Q9Y426 696 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 TSPAN1O60635 241 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 AVPR1AP37288 418 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 RCN2Q14257 317 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 NPY5RQ15761 445 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 SMARCD1Q96GM5 515 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 RWDD3Q9Y3V2 267 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 ASTN1O14525 1302 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 APOL1O14791 398 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 FGGP02679 453 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 CDR2Q01850 454 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 ARSHQ5FYA8 562 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 GDF6Q6KF10 455 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-207ENST00000429896 CCDC149Q6ZUS6 474 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 ANKS3Q6ZW76 656 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 IFT43Q96FT9 208 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 SHANK3Q9BYB0 1731 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 NXF3Q9H4D5 531 aaKnown RBP13.55□□□□□ -0.24
PTCH1-207ENST00000429896 NAV1Q8NEY1 1877 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 LRP5O75197 1615 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 CKMP06732 381 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 CYP2C18P33260 490 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 SLC11A2P49281 568 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 GALCP54803 685 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 YWHAGP61981 247 aaKnown RBP eCLIP13.55□□□□□ -0.24
PTCH1-207ENST00000429896 TATDN2Q93075 761 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 CDK5RAP1Q96SZ6 601 aaKnown RBP13.55□□□□□ -0.24
PTCH1-207ENST00000429896 PTPN18Q99952 460 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 ZNF518BQ9C0D4 1074 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 CCDC88AQ3V6T2 1871 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 F5H423 210 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-207ENST00000429896 SETSIPP0DME0 302 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 NAB2Q15742 525 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 PGLYRP2Q96PD5 576 aa13.55□□□□□ -0.24
PTCH1-207ENST00000429896 COL5A3P25940 1745 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-207ENST00000429896 EEF2KO00418 725 aaKnown RBP13.54□□□□□ -0.24
PTCH1-207ENST00000429896 NEMP1O14524 444 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 ZNF189O75820 626 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-207ENST00000429896 TRIP13Q15645 432 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-207ENST00000429896 MUM1Q2TAK8 710 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 BSNDQ8WZ55 320 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 CDKL2Q92772 493 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 ZBTB10Q96DT7 871 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 ELOVL4Q9GZR5 314 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 DERAQ9Y315 318 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 UBR3Q6ZT12 1888 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 ZNF862O60290 1169 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 MBTD1Q05BQ5 628 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 CDKL3Q8IVW4 592 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-207ENST00000429896 CXorf38Q8TB03 319 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 SLC35G2Q8TBE7 412 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 DYRK4Q9NR20 520 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 UXTQ9UBK9 157 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-207ENST00000429896 ADAMTS5Q9UNA0 930 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 SYNDIG1LA6NDD5 238 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 CPP00450 1065 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 CYP11B1P15538 503 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 MKRN4PQ13434 485 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-207ENST00000429896 KCTD16Q68DU8 428 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 ACAD10Q6JQN1 1059 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 ZNF449Q6P9G9 518 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 CHSY1Q86X52 802 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 SCLYQ96I15 445 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 MUC3BQ9H195 1237 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 TLR8Q9NR97 1041 aaKnown RBP13.54□□□□□ -0.24
PTCH1-207ENST00000429896 ANGPTL3Q9Y5C1 460 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 LY75O60449 1722 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 TRIM66O15016 1216 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 KLRC4O43908 158 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 ADRB2P07550 413 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 ACRP10323 421 aa13.54□□□□□ -0.24
PTCH1-207ENST00000429896 FXR1P51114 621 aaKnown RBP eCLIP13.54□□□□□ -0.24
PTCH1-207ENST00000429896 AP1B1Q10567 949 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms