RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TMEM40Q8WWA1 233 aa8.82□□□□□ -1
CD44-208ENST00000428726 BRI3BPQ8WY22 251 aa8.82□□□□□ -1
CD44-208ENST00000428726 HPDLQ96IR7 371 aa8.82□□□□□ -1
CD44-208ENST00000428726 ANKRD36BP1Q96IX9 119 aa8.82□□□□□ -1
CD44-208ENST00000428726 DCLK3Q9C098 648 aa8.82□□□□□ -1
CD44-208ENST00000428726 EPN3Q9H201 632 aa8.82□□□□□ -1
CD44-208ENST00000428726 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.82□□□□□ -1
CD44-208ENST00000428726 NUDT5Q9UKK9 219 aa8.82□□□□□ -1
CD44-208ENST00000428726 HMGB1P1B2RPK0 211 aaPredicted RBP8.81□□□□□ -1
CD44-208ENST00000428726 DNM1LO00429 736 aa8.81□□□□□ -1
CD44-208ENST00000428726 RIPK2O43353 540 aa8.81□□□□□ -1
CD44-208ENST00000428726 PROSCO94903 275 aa8.81□□□□□ -1
CD44-208ENST00000428726 UPP2O95045 317 aa8.81□□□□□ -1
CD44-208ENST00000428726 CHRNA3P32297 505 aa8.81□□□□□ -1
CD44-208ENST00000428726 ASPAP45381 313 aa8.81□□□□□ -1
CD44-208ENST00000428726 PITX1P78337 314 aaPredicted RBP8.81□□□□□ -1
CD44-208ENST00000428726 EMC10Q5UCC4 262 aa8.81□□□□□ -1
CD44-208ENST00000428726 C15orf39Q6ZRI6 1047 aa8.81□□□□□ -1
CD44-208ENST00000428726 PNMA8AQ86V59 439 aaPredicted RBP8.81□□□□□ -1
CD44-208ENST00000428726 BRSK2Q8IWQ3 736 aa8.81□□□□□ -1
CD44-208ENST00000428726 TP53INP2Q8IXH6 220 aa8.81□□□□□ -1
CD44-208ENST00000428726 KCTD6Q8NC69 237 aa8.81□□□□□ -1
CD44-208ENST00000428726 DNERQ8NFT8 737 aa8.81□□□□□ -1
CD44-208ENST00000428726 ACTL9Q8TC94 416 aa8.81□□□□□ -1
CD44-208ENST00000428726 ARHGEF2Q92974 986 aaKnown RBP8.81□□□□□ -1
CD44-208ENST00000428726 FAM149B1Q96BN6 582 aa8.81□□□□□ -1
CD44-208ENST00000428726 PASKQ96RG2 1323 aa8.81□□□□□ -1
CD44-208ENST00000428726 RBM15Q96T37 977 aaKnown RBP eCLIP8.81□□□□□ -1
CD44-208ENST00000428726 NIF3L1Q9GZT8 377 aa8.81□□□□□ -1
CD44-208ENST00000428726 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.81□□□□□ -1
CD44-208ENST00000428726 UVRAGQ9P2Y5 699 aa8.81□□□□□ -1
CD44-208ENST00000428726 MTRF1LQ9UGC7 380 aaKnown RBP8.81□□□□□ -1
CD44-208ENST00000428726 PAPPA2Q9BXP8 1791 aa8.81□□□□□ -1
CD44-208ENST00000428726 FAM155BO75949 473 aa8.81□□□□□ -1
CD44-208ENST00000428726 MYL3P08590 195 aa8.81□□□□□ -1
CD44-208ENST00000428726 OTUD4Q01804 1114 aaKnown RBP8.81□□□□□ -1
CD44-208ENST00000428726 MBTD1Q05BQ5 628 aa8.81□□□□□ -1
CD44-208ENST00000428726 CA9Q16790 459 aa8.81□□□□□ -1
CD44-208ENST00000428726 SGSM1Q2NKQ1 1148 aa8.81□□□□□ -1
CD44-208ENST00000428726 MPZL3Q6UWV2 235 aa8.81□□□□□ -1
CD44-208ENST00000428726 KDM7AQ6ZMT4 941 aa8.81□□□□□ -1
CD44-208ENST00000428726 RUFY4Q6ZNE9 571 aa8.81□□□□□ -1
CD44-208ENST00000428726 CCDC121Q6ZUS5 278 aa8.81□□□□□ -1
CD44-208ENST00000428726 UNC45BQ8IWX7 931 aa8.81□□□□□ -1
CD44-208ENST00000428726 PYROXD2Q8N2H3 581 aa8.81□□□□□ -1
CD44-208ENST00000428726 KIF2BQ8N4N8 673 aa8.81□□□□□ -1
CD44-208ENST00000428726 OR6J1Q8NGC5 347 aa8.81□□□□□ -1
CD44-208ENST00000428726 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.81□□□□□ -1
CD44-208ENST00000428726 TCP11Q8WWU5 503 aa8.81□□□□□ -1
CD44-208ENST00000428726 RHOBTB2Q9BYZ6 727 aa8.81□□□□□ -1
CD44-208ENST00000428726 XYLT2Q9H1B5 865 aa8.81□□□□□ -1
CD44-208ENST00000428726 PABPC3Q9H361 631 aaKnown RBP8.81□□□□□ -1
CD44-208ENST00000428726 INTS9Q9NV88 658 aaKnown RBP8.81□□□□□ -1
CD44-208ENST00000428726 FGFR1OP2Q9NVK5 253 aa8.81□□□□□ -1
CD44-208ENST00000428726 SLC17A6Q9P2U8 582 aa8.81□□□□□ -1
CD44-208ENST00000428726 DDX20Q9UHI6 824 aaKnown RBP8.81□□□□□ -1
CD44-208ENST00000428726 CPSF3Q9UKF6 684 aaKnown RBP8.81□□□□□ -1
CD44-208ENST00000428726 TRIM33Q9UPN9 1127 aa8.81□□□□□ -1
CD44-208ENST00000428726 PIN4Q9Y237 131 aaKnown RBP8.81□□□□□ -1
CD44-208ENST00000428726 MYO7AQ13402 2215 aa8.81□□□□□ -1
CD44-208ENST00000428726 ADGRA2Q96PE1 1338 aa8.81□□□□□ -1
CD44-208ENST00000428726 A0A1W2PPM1 405 aa8.8□□□□□ -1
CD44-208ENST00000428726 TREHO43280 583 aa8.8□□□□□ -1
CD44-208ENST00000428726 SKAP2O75563 359 aaPredicted RBP8.8□□□□□ -1
CD44-208ENST00000428726 SNAI1O95863 264 aaPredicted RBP8.8□□□□□ -1
CD44-208ENST00000428726 PGK1P00558 417 aa8.8□□□□□ -1
CD44-208ENST00000428726 CYP3A5P20815 502 aa8.8□□□□□ -1
CD44-208ENST00000428726 GTF2A2P52657 109 aa8.8□□□□□ -1
CD44-208ENST00000428726 CDH6P55285 790 aa8.8□□□□□ -1
CD44-208ENST00000428726 PDIA2Q13087 525 aaKnown RBP8.8□□□□□ -1
CD44-208ENST00000428726 MSS51Q4VC12 460 aa8.8□□□□□ -1
CD44-208ENST00000428726 NOL9Q5SY16 702 aaKnown RBP8.8□□□□□ -1
CD44-208ENST00000428726 PPP1R26Q5T8A7 1209 aaPredicted RBP8.8□□□□□ -1
CD44-208ENST00000428726 IER5Q5VY09 327 aa8.8□□□□□ -1
CD44-208ENST00000428726 SLFN12LQ6IEE8 588 aa8.8□□□□□ -1
CD44-208ENST00000428726 RHOT1Q8IXI2 618 aa8.8□□□□□ -1
CD44-208ENST00000428726 PNPLA1Q8N8W4 532 aa8.8□□□□□ -1
CD44-208ENST00000428726 GPRC5AQ8NFJ5 357 aa8.8□□□□□ -1
CD44-208ENST00000428726 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.8□□□□□ -1
CD44-208ENST00000428726 PPP2R3BQ9Y5P8 575 aa8.8□□□□□ -1
CD44-208ENST00000428726 SPDYE5A6NIY4 337 aa8.8□□□□□ -1
CD44-208ENST00000428726 TCP11X1B4DZS4 312 aa8.8□□□□□ -1
CD44-208ENST00000428726 FAM189A1O60320 539 aa8.8□□□□□ -1
CD44-208ENST00000428726 MICAL2O94851 1124 aa8.8□□□□□ -1
CD44-208ENST00000428726 ATG7O95352 703 aa8.8□□□□□ -1
CD44-208ENST00000428726 TOP3BO95985 862 aaKnown RBP8.8□□□□□ -1
CD44-208ENST00000428726 KRT15P19012 456 aa8.8□□□□□ -1
CD44-208ENST00000428726 OSBPP22059 807 aa8.8□□□□□ -1
CD44-208ENST00000428726 ICAM3P32942 547 aa8.8□□□□□ -1
CD44-208ENST00000428726 ABCG1P45844 678 aa8.8□□□□□ -1
CD44-208ENST00000428726 DRG2P55039 364 aaKnown RBP8.8□□□□□ -1
CD44-208ENST00000428726 CENPCQ03188 943 aa8.8□□□□□ -1
CD44-208ENST00000428726 ARHGAP1Q07960 439 aa8.8□□□□□ -1
CD44-208ENST00000428726 MOGSQ13724 837 aa8.8□□□□□ -1
CD44-208ENST00000428726 SPDYCQ5MJ68 293 aa8.8□□□□□ -1
CD44-208ENST00000428726 TRNP1Q6NT89 227 aa8.8□□□□□ -1
CD44-208ENST00000428726 CCDC62Q6P9F0 684 aa8.8□□□□□ -1
CD44-208ENST00000428726 ILDR2Q71H61 639 aa8.8□□□□□ -1
CD44-208ENST00000428726 KDELC2Q7Z4H8 507 aa8.8□□□□□ -1
CD44-208ENST00000428726 EXOC3L1Q86VI1 746 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms