RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 SPA17Q15506 151 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 PTPN14Q15678 1187 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 NFE2Q16621 373 aaPredicted RBP8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 PPP1R26Q5T8A7 1209 aaPredicted RBP8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 NAA35Q5VZE5 725 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 ARHGAP17Q68EM7 881 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 LCLAT1Q6UWP7 414 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 RSPO2Q6UXX9 243 aaPredicted RBP8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 C4orf50Q6ZRC1 276 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 FAM35AQ86V20 835 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 TMEM139Q8IV31 216 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 CCDC170Q8IYT3 715 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 C1orf131Q8NDD1 294 aaKnown RBP8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 LNX1Q8TBB1 728 aaPredicted RBP8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 SPPL3Q8TCT6 385 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 MICAL1Q8TDZ2 1067 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 GDPD5Q8WTR4 605 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 POF1BQ8WVV4 589 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 DDX1Q92499 740 aaKnown RBP8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 CYFIP2Q96F07 1278 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 SMARCD1Q96GM5 515 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 PCED1BQ96HM7 432 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 PGLYRP2Q96PD5 576 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 DESI2Q9BSY9 194 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 B3GNT5Q9BYG0 378 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 RHOBTB2Q9BYZ6 727 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 ZNF518BQ9C0D4 1074 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 PRO3102Q9H379 93 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 KCNF1Q9H3M0 494 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 ADAMTS1Q9UHI8 967 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 SSX2IPQ9Y2D8 614 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 PCDHGC5Q9Y5F6 944 aa8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 RANBP2P49792 3224 aaKnown RBP8.39□□□□□ -1.07
HMGA1P4-201ENST00000428643 TSC2P49815 1807 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 A0A087X0T9 212 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 TMCO5BA8MYB1 307 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 H3BNC9 293 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 ADAM12O43184 909 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 AP1G2O75843 785 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 NDUFA10O95299 355 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 CXCL14O95715 111 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 ADH1AP07327 375 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 CFHP08603 1231 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 FAM228BP0C875 321 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 SETSIPP0DME0 302 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 NPR3P17342 541 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 DNAJB1P25685 340 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 OR1D2P34982 312 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 NSFP46459 744 aaKnown RBP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 BCAT1P54687 386 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 ROR1Q01973 937 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 GFPT1Q06210 699 aaPredicted RBP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 BST2Q10589 180 aaKnown RBP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 CNGA2Q16280 664 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 SLC18A3Q16572 532 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 CLEC16AQ2KHT3 1053 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 HABP4Q5JVS0 413 aaKnown RBP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 SLC8B1Q6J4K2 584 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 FAM171BQ6P995 826 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 RAD9BQ6WBX8 426 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 TOGARAM2Q6ZUX3 1019 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 LRRTM3Q86VH5 581 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 PALB2Q86YC2 1186 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 GPR65Q8IYL9 337 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 FUKQ8N0W3 1084 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 TMEM35BQ8NCS4 154 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 MSANTD4Q8NCY6 345 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 UBA3Q8TBC4 463 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 SECISBP2LQ93073 1101 aaKnown RBP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 NOX5Q96PH1 765 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 PCDHB18PQ96TA0 734 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 PKMYT1Q99640 499 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 SEPT5Q99719 369 aaPredicted RBP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 HNRNPABQ99729 332 aaKnown RBP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 SYT11Q9BT88 431 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 EMILIN2Q9BXX0 1053 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 SYNCQ9H7C4 482 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 DMAP1Q9NPF5 467 aaPredicted RBP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 LUC7LQ9NQ29 371 aaKnown RBP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 TMLHEQ9NVH6 421 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 PCDHGC3Q9UN70 934 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 COLQQ9Y215 455 aaPredicted RBP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 PCDHB5Q9Y5E4 795 aa8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.38□□□□□ -1.07
HMGA1P4-201ENST00000428643 SCN1AP35498 2009 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 MTMR11A4FU01 709 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 HIDE1A8MVS5 230 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 PRRG1O14668 218 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 TEX28O15482 410 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 TBC1D4O60343 1298 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 CNPP09543 421 aaKnown RBP8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 BDNFP23560 247 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 RGS7P49802 495 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 ERVFC1P60507 584 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 NOMO3P69849 1222 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 ADCY1Q08828 1119 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 SMARCB1Q12824 385 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 GPR17Q13304 367 aa8.37□□□□□ -1.07
HMGA1P4-201ENST00000428643 PDCLQ13371 301 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms