RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MTA3Q9BTC8 594 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 BBS2Q9BXC9 721 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 FHDC1Q9C0D6 1143 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 MIEF1Q9NQG6 463 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 CHST12Q9NRB3 414 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 CTNNAL1Q9UBT7 734 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 ADCY10Q96PN6 1610 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 WWP2O00308 870 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 STX7O15400 261 aaKnown RBP7.13□□□□□ -1.27
SCN1A-204ENST00000423058 PCDH8O95206 1070 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 CRTAMO95727 393 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 PDGFRAP16234 1089 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 CYP2B6P20813 491 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 TALDO1P37837 337 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 KBTBD12Q3ZCT8 623 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 WLSQ5T9L3 541 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 CD302Q8IX05 232 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 POMGNT2Q8NAT1 580 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 EME1Q96AY2 570 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 AGPAT1Q99943 283 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 KLHL28Q9NXS3 571 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 RCOR1Q9UKL0 485 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 MAP3K4Q9Y6R4 1608 aa7.13□□□□□ -1.27
SCN1A-204ENST00000423058 CEP170Q5SW79 1584 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 XYLBO75191 536 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 PLEKHA8P1O95397 391 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 MBL2P11226 248 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 FDFT1P37268 417 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 AVPR1AP37288 418 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 PURAQ00577 322 aaKnown RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 PPIL2Q13356 520 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 TRAF7Q6Q0C0 670 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 SUGP1Q8IWZ8 645 aaKnown RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF655Q8N720 491 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF614Q8N883 585 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CASP10Q92851 521 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 HPDLQ96IR7 371 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 OLFM1Q99784 485 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CYP2C8P10632 490 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CYP19A1P11511 503 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CDC25AP30304 524 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 PGM1P36871 562 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CLK3P49761 638 aaKnown RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ATP2C1P98194 919 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CAMK1DQ8IU85 385 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 NBPF15Q8N660 670 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF557Q8N988 423 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 C1orf131Q8NDD1 294 aaKnown RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 FBXO32Q969P5 355 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 RMND5BQ96G75 393 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 MAGEB10Q96LZ2 347 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CLPBQ9H078 707 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CCDC134Q9H6E4 229 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 STON1Q9Y6Q2 735 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ITIH6Q6UXX5 1313 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 USP6P35125 1406 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 PREX2Q70Z35 1606 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 SEC24DO94855 1032 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CKMP06732 381 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 GPR1P46091 355 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 TAF6P49848 677 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 NCAPHQ15003 741 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CYP51A1Q16850 503 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 MCOLN3Q8TDD5 553 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 MTERF3Q96E29 417 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 WNK4Q96J92 1243 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CCT7Q99832 543 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 BPIFA3Q9BQP9 254 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ENOPH1Q9UHY7 261 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 MSRAQ9UJ68 235 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 KLHL20Q9Y2M5 609 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 COQ6Q9Y2Z9 468 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 A0A087WZ62 844 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 RFX3P48380 749 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 STX3Q13277 289 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 RIBC1Q8N443 379 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 IPMKQ8NFU5 416 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 FAM45AQ8TCE6 357 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 STK39Q9UEW8 545 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ATP6V1HQ9UI12 483 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 POLR1DQ9Y2S0 133 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 GSTM1P09488 218 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CLTBP09497 229 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 TCEA2Q15560 299 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 DHX40Q8IX18 779 aaKnown RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 TERB1Q8NA31 727 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 TBC1D23Q9NUY8 699 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 PSMC3IPQ9P2W1 217 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 DCDC2Q9UHG0 476 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 FBXO10Q9UK96 956 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ARHGEF40Q8TER5 1519 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 SF3B1O75533 1304 aaKnown RBP eCLIP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ANO9A1A5B4 782 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ALBP02768 609 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 NOS3P29474 1203 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 GCLCP48506 637 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 RENBPP51606 427 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 SCARF1Q14162 830 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 TAF13Q15543 124 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CCNG2Q16589 344 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms