RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CIDEBQ9UHD4 219 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 USTQ9Y2C2 406 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 SNCAIPQ9Y6H5 919 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 LOXHD1Q8IVV2 1947 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 A0A088AWK7 358 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 TTC36A6NLP5 189 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 E7ESA3 106 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 NDC80O14777 642 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 UFL1O94874 794 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 FAM163BP0C2L3 166 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 TCF4P15884 667 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 NSFP46459 744 aaKnown RBP11.21□□□□□ -0.61
USP54-204ENST00000422491 BPIFB4P59827 614 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 ANKRD22Q5VYY1 191 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 B3GNT9Q6UX72 402 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 MFSD7Q6UXD7 560 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 NKD2Q969F2 451 aaPredicted RBP11.21□□□□□ -0.61
USP54-204ENST00000422491 NMD3Q96D46 503 aaKnown RBP11.21□□□□□ -0.61
USP54-204ENST00000422491 CCDC106Q9BWC9 280 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 TOPORSQ9NS56 1045 aaPredicted RBP11.21□□□□□ -0.61
USP54-204ENST00000422491 CLIC5Q9NZA1 410 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 PTTG2Q9NZH5 202 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 NDUFA13Q9P0J0 144 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 ZNF510Q9Y2H8 683 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 PPME1Q9Y570 386 aa11.21□□□□□ -0.61
USP54-204ENST00000422491 AP1G1O43747 822 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 MT-ND3P03897 115 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 ITGAVP06756 1048 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 ATF7P17544 494 aaPredicted RBP11.21□□□□□ -0.62
USP54-204ENST00000422491 VCLP18206 1134 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 DSG3P32926 999 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 CPOXP36551 454 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 RGS2P41220 211 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 AQP4P55087 323 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 KCNQ4P56696 695 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 GTF2BQ00403 316 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 GCNT1Q02742 428 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 DLG1Q12959 904 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 ITGA9Q13797 1035 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 ZNF677Q86XU0 584 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 SIAH1Q8IUQ4 282 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 RCOR2Q8IZ40 523 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 FBXO36Q8NEA4 188 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 CCDC17Q96LX7 622 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 TMEM121Q9BTD3 319 aa11.21□□□□□ -0.62
USP54-204ENST00000422491 PPARGC1AQ9UBK2 798 aaKnown RBP11.21□□□□□ -0.62
USP54-204ENST00000422491 VILLO15195 856 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 CCDC166P0CW27 439 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 SMIM18P0DKX4 95 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 XIAPP98170 497 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 DDB1Q16531 1140 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 LRRC36Q1X8D7 754 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 SH2D4BQ5SQS7 431 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 LPCAT4Q643R3 524 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 PLEKHA7Q6IQ23 1121 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 UGT2A3Q6UWM9 527 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 PRPF39Q86UA1 669 aaKnown RBP11.2□□□□□ -0.62
USP54-204ENST00000422491 RHPN2Q8IUC4 686 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 NAT8LQ8N9F0 302 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 GSTCDQ8NEC7 633 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 LZICQ8WZA0 190 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 CPT1BQ92523 772 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 RPGRQ92834 1020 aaKnown RBP11.2□□□□□ -0.62
USP54-204ENST00000422491 DGCR14Q96DF8 476 aaKnown RBP11.2□□□□□ -0.62
USP54-204ENST00000422491 C7orf26Q96N11 449 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 C11orf70Q9BRQ4 267 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 NYAP2Q9P242 653 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 ADAMTS6Q9UKP5 1117 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 PCDHB2Q9Y5E7 798 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 SMCHD1A6NHR9 2005 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 ZNF831Q5JPB2 1677 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 IFNB1P01574 187 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 GYS1P13807 737 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 SNRPFP62306 86 aaKnown RBP11.2□□□□□ -0.62
USP54-204ENST00000422491 HPCAP84074 193 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 PDE1BQ01064 536 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 DEUP1Q05D60 604 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.2□□□□□ -0.62
USP54-204ENST00000422491 CES4AQ5XG92 561 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 HAUS6Q7Z4H7 955 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 PCGF5Q86SE9 256 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 MIPOL1Q8TD10 442 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 PYDC1Q8WXC3 89 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 PRICKLE1Q96MT3 831 aaPredicted RBP11.2□□□□□ -0.62
USP54-204ENST00000422491 PI4K2AQ9BTU6 479 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 KLHL4Q9C0H6 718 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 ST6GALNAC4Q9H4F1 302 aa11.2□□□□□ -0.62
USP54-204ENST00000422491 CNTNAP4Q9C0A0 1308 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 IQANK1A0A1B0GTG1 560 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 BTBD19C9JJ37 291 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 SGK1O00141 431 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 IPO5O00410 1097 aaKnown RBP11.19□□□□□ -0.62
USP54-204ENST00000422491 TLR3O15455 904 aaKnown RBP11.19□□□□□ -0.62
USP54-204ENST00000422491 KCNQ2O43526 872 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 KRT1P04264 644 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 CFHP08603 1231 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 RPL26P61254 145 aaKnown RBP11.19□□□□□ -0.62
USP54-204ENST00000422491 PTK7Q13308 1070 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 PDK3Q15120 406 aa11.19□□□□□ -0.62
USP54-204ENST00000422491 TBCCQ15814 346 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms