RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CC2D1AQ6P1N0 951 aaPredicted RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 KRI1Q8N9T8 703 aaKnown RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 GLIS3Q8NEA6 775 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 C2orf15Q8WU43 125 aaKnown RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 MRPS31Q92665 395 aaKnown RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 DNAJC19Q96DA6 116 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 P2RY13Q9BPV8 354 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 CBWD1Q9BRT8 395 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 TPSD1Q9BZJ3 242 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 CCSER1Q9C0I3 900 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 ST6GALNAC4Q9H4F1 302 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 MRPL44Q9H9J2 332 aaKnown RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 PDE11AQ9HCR9 933 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 DUS2Q9NX74 493 aaKnown RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 SMC3Q9UQE7 1217 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 KIF3AQ9Y496 699 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 GTF3C3Q9Y5Q9 886 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 SNX9Q9Y5X1 595 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 SPEGQ15772 3267 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 PTPRJQ12913 1337 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 SPTBN2O15020 2390 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 EPG5Q9HCE0 2579 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 A0A087X0B3 334 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 PATE3B3GLJ2 98 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 HUS1O60921 280 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 ATG13O75143 517 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 NOL4O94818 638 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 PRPF6O94906 941 aaKnown RBP8.7□□□□□ -1.02
VIM-202ENST00000421459 IL18RAPO95256 599 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 KCNK5O95279 499 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 GCNT3O95395 438 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 CSH1P0DML2 217 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 CSH2P0DML3 217 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 SPINK2P20155 84 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 DRD1P21728 446 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 BCKDHBP21953 392 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 DDX6P26196 483 aaKnown RBP eCLIP8.7□□□□□ -1.02
VIM-202ENST00000421459 DGKEP52429 567 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 USP46P62068 366 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 CREB5Q02930 508 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 MESP2Q0VG99 397 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 SMARCB1Q12824 385 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 DMC1Q14565 340 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 PTPAQ15257 358 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 SOWAHAQ2M3V2 549 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 GAB4Q2WGN9 574 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 EML3Q32P44 896 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 C2orf27AQ580R0 203 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 INTS6LQ5JSJ4 861 aaKnown RBP8.7□□□□□ -1.02
VIM-202ENST00000421459 L1TD1Q5T7N2 865 aaKnown RBP8.7□□□□□ -1.02
VIM-202ENST00000421459 PSAPL1Q6NUJ1 521 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 CCDC33Q8N5R6 958 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 FRMD1Q8N878 549 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 OR5B17Q8NGF7 314 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 SH3RF2Q8TEC5 729 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 OSCP1Q8WVF1 389 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 CD101Q93033 1021 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 HPS3Q969F9 1004 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 ZC3H10Q96K80 434 aaKnown RBP8.7□□□□□ -1.02
VIM-202ENST00000421459 ACCSQ96QU6 501 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 ACBD6Q9BR61 282 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 MTMR12Q9C0I1 747 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 ZDHHC4Q9NPG8 344 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 RBAKQ9NYW8 714 aaPredicted RBP8.7□□□□□ -1.02
VIM-202ENST00000421459 GCNT4Q9P109 453 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 FBXO2Q9UK22 296 aaPredicted RBP8.7□□□□□ -1.02
VIM-202ENST00000421459 ANGPTL2Q9UKU9 493 aa8.7□□□□□ -1.02
VIM-202ENST00000421459 KIF26AQ9ULI4 1882 aaPredicted RBP8.69□□□□□ -1.02
VIM-202ENST00000421459 TRAV19A0A0A6YYK7 116 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 CCDC163A0A0D9SF12 145 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 VPS37CA5D8V6 355 aaPredicted RBP8.69□□□□□ -1.02
VIM-202ENST00000421459 C4orf47A7E2U8 309 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 K7EQS6 105 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 GABRDO14764 452 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 SLC26A4O43511 780 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 CAVIN2O95810 425 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 CKMP06732 381 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 PDGFRBP09619 1106 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 USP17L7P0C7H9 530 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 IDEP14735 1019 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 HNRNPLP14866 589 aaKnown RBP eCLIP8.69□□□□□ -1.02
VIM-202ENST00000421459 BDNFP23560 247 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 GBP1P32455 592 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 OPRD1P41143 372 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 SLC6A11P48066 632 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 IFNAR2P48551 515 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 LIMK1P53667 647 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 CACNA2D1P54289 1103 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 RPL10AP62906 217 aaKnown RBP8.69□□□□□ -1.02
VIM-202ENST00000421459 FAM160A1Q05DH4 1040 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 USP4Q13107 963 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 ZNF268Q14587 947 aaPredicted RBP8.69□□□□□ -1.02
VIM-202ENST00000421459 POSTNQ15063 836 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 PDGFRLQ15198 375 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 NFE2Q16621 373 aaPredicted RBP8.69□□□□□ -1.02
VIM-202ENST00000421459 EMC10Q5UCC4 262 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 ERICH6BQ5W0A0 696 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 RNF43Q68DV7 783 aa8.69□□□□□ -1.02
VIM-202ENST00000421459 SYT13Q7L8C5 426 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms