RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 RAG1P15918 1043 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 MMP8P22894 467 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CYP2C18P33260 490 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 MLLT3P42568 568 aaPredicted RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 LHX1P48742 406 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 AARSP49588 968 aaKnown RBP eCLIP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 DNA2P51530 1060 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CLCNKBP51801 687 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CCL23P55773 120 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 GSCP56915 257 aaPredicted RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 TSPY1Q01534 308 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 FAAP100Q0VG06 881 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 BST2Q10589 180 aaKnown RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 ELAVL2Q12926 359 aaKnown RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 TCEAL1Q15170 157 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 UPP1Q16831 310 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 LRRC26Q2I0M4 334 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 SWT1Q5T5J6 900 aaKnown RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 ARHGAP17Q68EM7 881 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 DEFB128Q7Z7B8 93 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 ACOT1Q86TX2 421 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 ERICH1Q86X53 443 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 MCOLN2Q8IZK6 566 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 TMEM130Q8N3G9 435 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 UBL4BQ8N7F7 174 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CEP112Q8N8E3 955 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 B3GALNT2Q8NCR0 500 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 C3orf20Q8ND61 904 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 MYRIPQ8NFW9 859 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 UBE2Q2Q8WVN8 375 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 KBTBD7Q8WVZ9 684 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CPA5Q8WXQ8 436 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 PAWRQ96IZ0 340 aaKnown RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 SENP8Q96LD8 212 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 HEXIM2Q96MH2 286 aaKnown RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 PLVAPQ9BX97 442 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 OSBPL7Q9BZF2 842 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CXCL16Q9H2A7 254 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 LHX5Q9H2C1 402 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 L2HGDHQ9H9P8 463 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 PRDM10Q9NQV6 1147 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 KRT82Q9NSB4 513 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 RNF19AQ9NV58 838 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 TBC1D13Q9NVG8 400 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 DDX43Q9NXZ2 648 aaKnown RBP6.31□□□□□ -1.4
HMGB3-202ENST00000419110 WDR35Q9P2L0 1181 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 PRKAG2Q9UGJ0 569 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 CDC23Q9UJX2 597 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 ANAPC7Q9UJX3 599 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 AMFRQ9UKV5 643 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 SNX12Q9UMY4 172 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 SAR1BQ9Y6B6 198 aa6.31□□□□□ -1.4
HMGB3-202ENST00000419110 FAM170AA1A519 330 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 ENC1O14682 589 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 KIAA0355O15063 1070 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 SPTLC1O15269 473 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 BUB1BO60566 1050 aaPredicted RBP6.3□□□□□ -1.4
HMGB3-202ENST00000419110 B3GAT3O94766 335 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 BAIAP3O94812 1187 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 AMHP03971 560 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 FAM200BP0CF97 657 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 CCDC130P13994 396 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 TYMPP19971 482 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 RRM1P23921 792 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 ADORA2BP29275 332 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 SSTR3P32745 418 aaPredicted RBP6.3□□□□□ -1.4
HMGB3-202ENST00000419110 MAN1A1P33908 653 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 GNL1P36915 607 aaPredicted RBP6.3□□□□□ -1.4
HMGB3-202ENST00000419110 OR1G1P47890 313 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 TERF1P54274 439 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 PSMC1P62191 440 aaKnown RBP6.3□□□□□ -1.4
HMGB3-202ENST00000419110 AMPD2Q01433 879 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 DSC1Q08554 894 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 PPIGQ13427 754 aaKnown RBP eCLIP6.3□□□□□ -1.4
HMGB3-202ENST00000419110 IKBKEQ14164 716 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 LAPTM4AQ15012 233 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 RPS6KA1Q15418 735 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 MAPRE1Q15691 268 aaKnown RBP6.3□□□□□ -1.4
HMGB3-202ENST00000419110 CLUL1Q15846 466 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 CNGA2Q16280 664 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 SOWAHAQ2M3V2 549 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 PTPN20Q4JDL3 420 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 PAN2Q504Q3 1202 aaKnown RBP6.3□□□□□ -1.4
HMGB3-202ENST00000419110 MDH1BQ5I0G3 518 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 FAM102AQ5T9C2 384 aaPredicted RBP6.3□□□□□ -1.4
HMGB3-202ENST00000419110 SEL1L2Q5TEA6 688 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 WSCD1Q658N2 575 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 ZNF280DQ6N043 979 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 CCDC70Q6NSX1 233 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 DENND1BQ6P3S1 775 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 DCUN1D2Q6PH85 259 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 LCLAT1Q6UWP7 414 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 LIMS2Q7Z4I7 341 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 OSTM1Q86WC4 334 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 TMEM199Q8N511 208 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 LRRC57Q8N9N7 239 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 C3orf58Q8NDZ4 430 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 GSTCDQ8NEC7 633 aa6.3□□□□□ -1.4
HMGB3-202ENST00000419110 SLC35G2Q8TBE7 412 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms