RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 GTF3C4Q9UKN8 822 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 TSPAN16Q9UKR8 245 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 INTUQ9ULD6 942 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 SSX2IPQ9Y2D8 614 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 YBX2Q9Y2T7 364 aaKnown RBP15.11■□□□□ 0.01
SF3B1-204ENST00000414963 PCDHA13Q9Y5I0 950 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 ARHGEF15O94989 841 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 CCDC175P0C221 793 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 CTSAP10619 480 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 CCDC130P13994 396 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 CTNNB1P35222 781 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 CYP27A1Q02318 531 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 TAP1Q03518 808 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 GPR17Q13304 367 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 PSMD5Q16401 504 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 NFE2Q16621 373 aaPredicted RBP15.1■□□□□ 0.01
SF3B1-204ENST00000414963 GOLGA7BQ2TAP0 167 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 RSPO2Q6UXX9 243 aaPredicted RBP15.1■□□□□ 0.01
SF3B1-204ENST00000414963 TTC30AQ86WT1 665 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 PHF13Q86YI8 300 aaPredicted RBP15.1■□□□□ 0.01
SF3B1-204ENST00000414963 SPPL3Q8TCT6 385 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 SLC2A14Q8TDB8 520 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 SLC35F5Q8WV83 523 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 VCPIP1Q96JH7 1222 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 TMEM209Q96SK2 561 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 C17orf80Q9BSJ5 609 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 DUSP16Q9BY84 665 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 PBX4Q9BYU1 374 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 UBXN6Q9BZV1 441 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 ZBP1Q9H171 429 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 RXFP1Q9HBX9 757 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.1■□□□□ 0.01
SF3B1-204ENST00000414963 SEPT11Q9NVA2 429 aaKnown RBP15.1■□□□□ 0.01
SF3B1-204ENST00000414963 TMLHEQ9NVH6 421 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 TAS2R14Q9NYV8 317 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 FNIP2Q9P278 1114 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 HESX1Q9UBX0 185 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 MSRAQ9UJ68 235 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 PPP2R2CQ9Y2T4 447 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 CEP83Q9Y592 693 aa15.1■□□□□ 0.01
SF3B1-204ENST00000414963 PJA2O43164 708 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 FTLP02792 175 aaPredicted RBP15.09■□□□□ 0.01
SF3B1-204ENST00000414963 URODP06132 367 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 MMP8P22894 467 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 MAGEA1P43355 309 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 RPL34P49207 117 aaKnown RBP15.09■□□□□ 0.01
SF3B1-204ENST00000414963 VAV2P52735 878 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 BCAT1P54687 386 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 CREMQ03060 361 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 CFAP221Q4G0U5 840 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 NAA35Q5VZE5 725 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 PRSS55Q6UWB4 352 aaPredicted RBP15.09■□□□□ 0.01
SF3B1-204ENST00000414963 C4orf50Q6ZRC1 276 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 TXLNBQ8N3L3 684 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 ACRBPQ8NEB7 543 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 FBXO22Q8NEZ5 403 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 C2orf15Q8WU43 125 aaKnown RBP15.09■□□□□ 0.01
SF3B1-204ENST00000414963 MYLPFQ96A32 169 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 FUBP3Q96I24 572 aaKnown RBP eCLIP15.09■□□□□ 0.01
SF3B1-204ENST00000414963 CLSTN3Q9BQT9 956 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 DESI2Q9BSY9 194 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 C11orf84Q9BUA3 381 aaPredicted RBP15.09■□□□□ 0.01
SF3B1-204ENST00000414963 CSNK1G1Q9HCP0 422 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 ABCB6Q9NP58 842 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 CYLDQ9NQC7 956 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 MRPL17Q9NRX2 175 aaKnown RBP15.09■□□□□ 0.01
SF3B1-204ENST00000414963 IRAK3Q9Y616 596 aa15.09■□□□□ 0.01
SF3B1-204ENST00000414963 VWA8A3KMH1 1905 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 ANKRD62A6NC57 917 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 M0QYV0 167 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 ZSCAN12O43309 604 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 H2AFZP0C0S5 128 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 NPR3P17342 541 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 ADORA2BP29275 332 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 SSTR3P32745 418 aaPredicted RBP15.08■□□□□ 0
SF3B1-204ENST00000414963 PBX2P40425 430 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 MAGEA11P43364 429 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 NSFP46459 744 aaKnown RBP15.08■□□□□ 0
SF3B1-204ENST00000414963 SMAD3P84022 425 aaKnown RBP15.08■□□□□ 0
SF3B1-204ENST00000414963 C1QBPQ07021 282 aaKnown RBP15.08■□□□□ 0
SF3B1-204ENST00000414963 BST2Q10589 180 aaKnown RBP15.08■□□□□ 0
SF3B1-204ENST00000414963 PTP4A2Q12974 167 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 PTPN14Q15678 1187 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 CCDC142Q17RM4 750 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 H2AFVQ71UI9 128 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 FAM35AQ86V20 835 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 ZSCAN30Q86W11 494 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 PASD1Q8IV76 773 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 CCAR2Q8N163 923 aaKnown RBP15.08■□□□□ 0
SF3B1-204ENST00000414963 UBA3Q8TBC4 463 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 CPA5Q8WXQ8 436 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 SECISBP2LQ93073 1101 aaKnown RBP15.08■□□□□ 0
SF3B1-204ENST00000414963 SMARCD1Q96GM5 515 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 SLC4A5Q9BY07 1137 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 CYTH4Q9UIA0 394 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 MAFFQ9ULX9 164 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 KIAA1671Q9BY89 1806 aa15.08■□□□□ 0
SF3B1-204ENST00000414963 BTNL10A8MVZ5 291 aa15.07■□□□□ 0
SF3B1-204ENST00000414963 CLDN5O00501 218 aa15.07■□□□□ 0
SF3B1-204ENST00000414963 XPO1O14980 1071 aaKnown RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms