RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 WBP11Q9Y2W2 641 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 ARHGAP31Q2M1Z3 1444 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 VWA5AO00534 786 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 PHF2O75151 1096 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 BST2Q10589 180 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 ILKAPQ9H0C8 392 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 RPRD2Q5VT52 1461 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 A0A0D9SFI3 127 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 ZBTB7BO15156 539 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 RTN3O95197 1032 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 APOC1P02654 83 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 FAM58BPP0C7Q3 252 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 GRK3P35626 688 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 IL5RAQ01344 420 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 ZRANB3Q5FWF4 1079 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 UTP15Q8TED0 518 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 BPIFA3Q9BQP9 254 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 GRID1Q9ULK0 1009 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 RNF112Q9ULX5 631 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 DUSP12Q9UNI6 340 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 UGGT2Q9NYU1 1516 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 PABPC1P11940 636 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 SULT1E1P49888 294 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 AP1S3Q96PC3 154 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 SUGP1Q8IWZ8 645 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 CHPFQ8IZ52 775 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 RACGAP1Q9H0H5 632 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 EHD3Q9NZN3 535 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 PHGDHO43175 533 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 MOCS2O96007 188 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 FGAP02671 866 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 COPRSQ9NQ92 184 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 ETAA1Q9NY74 926 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 PFDN2Q9UHV9 154 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 ZMYM3Q14202 1370 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 MAGI1Q96QZ7 1491 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 MYH3P11055 1940 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 OR6B1O95007 311 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 FGRP09769 529 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 IFNGR2P38484 337 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 ADARP55265 1226 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 TIMM50Q3ZCQ8 353 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 LINC00523Q86TU6 105 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 CCDC28BQ9BUN5 200 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 LSM7Q9UK45 103 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 FAM220AQ7Z4H9 259 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 SCFD2Q8WU76 684 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 MCUBQ9NWR8 336 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 RPAP1Q9BWH6 1393 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 IQCMA0A1B0GVH7 501 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 PDHA2P29803 388 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 CRKP46108 304 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 USF2Q15853 346 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 SH3GLB2Q9NR46 395 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 FAM25EA8MYX2 175 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 ARL3P36405 182 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 SFSWAPQ12872 951 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 R3HDM1Q15032 1099 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 BNC2Q6ZN30 1099 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 TMEM26Q6ZUK4 368 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 PGBD3Q8N328 593 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 TSPAN14Q8NG11 270 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 CCDC115Q96NT0 180 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 NEU2Q9Y3R4 380 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 ERVK-10P10266 1014 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 HK2P52789 917 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 TGM3Q08188 693 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 ERMARDQ5T6L9 678 aa13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 NAIF1Q69YI7 327 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-204ENST00000413716 MSR1P21757 451 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 RGS21Q2M5E4 152 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 RESP18Q5W5W9 173 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 ZNF112Q9UJU3 913 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 SLC30A1Q9Y6M5 507 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 TOPBP1Q92547 1522 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 TPST1O60507 370 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 VCLP18206 1134 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 ITIH4Q14624 930 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 RPTNQ6XPR3 784 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 UNC13DQ70J99 1090 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 SETD9Q8NE22 299 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 TRPC4APQ8TEL6 797 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 RFFLQ8WZ73 363 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 PRKD2Q9BZL6 878 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 VAMP7P51809 220 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 ZNF846Q147U1 533 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 TMEM63BQ5T3F8 832 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 AGAP9Q5VTM2 703 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 CMTM6Q9NX76 183 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 ANAPC2Q9UJX6 822 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 IGF1RP08069 1367 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 TCF4P15884 667 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 RPS6KA3P51812 740 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 OXCT2Q9BYC2 517 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 EFCAB1Q9HAE3 211 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 RAPGEF6Q8TEU7 1601 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 CCNA2P20248 432 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 PTPN7P35236 360 aa13.81□□□□□ -0.2
CCDC88A-204ENST00000413716 OTUD5Q96G74 571 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms