RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 VTA1Q9NP79 307 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 PFDN4Q9NQP4 134 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 KCNH4Q9UQ05 1017 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 SPEF2Q9C093 1822 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 SOWAHBA6NEL2 793 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 SPDYE5A6NIY4 337 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 H3BRJ5 948 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 OPLAHO14841 1288 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 RECQL4O94761 1208 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 FAM200BP0CF97 657 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 MAP3K7CLP57077 242 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 OTUD4Q01804 1114 aaKnown RBP11.71□□□□□ -0.54
PTPRF-204ENST00000412568 MFSD10Q14728 455 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 ZCWPW2Q504Y3 356 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 COBLL1Q53SF7 1204 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 FBXO47Q5MNV8 452 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 PRUNE1Q86TP1 453 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 MIB1Q86YT6 1006 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 RNF135Q8IUD6 432 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 BBS5Q8N3I7 341 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 MTMR14Q8NCE2 650 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 OR6P1Q8NGX9 317 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 ACTL9Q8TC94 416 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 PABPC5Q96DU9 382 aaKnown RBP11.71□□□□□ -0.54
PTPRF-204ENST00000412568 ABCF3Q9NUQ8 709 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 MEFVO15553 781 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 RARAP10276 462 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 HIRAP54198 1017 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 FSTL1Q12841 308 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 RPS6KA2Q15349 733 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 DAW1Q8N136 415 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 ATP11CQ8NB49 1132 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 GSDMBQ8TAX9 411 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 AENQ8WTP8 325 aaKnown RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 LRRN4Q8WUT4 740 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 GAD1Q99259 594 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 SEMA4AQ9H3S1 761 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 LOC102724159A0A0B4J2E5 919 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 TYW5A2RUC4 315 aaKnown RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 GLTPD2A6NH11 291 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 TCP11X1B4DZS4 312 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 CST3P01034 146 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 VDRP11473 427 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 EPHB2P29323 1055 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 MAGEA4P43358 317 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 SPIRE1Q08AE8 756 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 PWP2Q15269 919 aaKnown RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 RNF180Q86T96 592 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 EPS8L3Q8TE67 593 aaKnown RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 EDEM1Q92611 657 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 KREMEN1Q96MU8 473 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 RAB3IPQ96QF0 476 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 LBHD1Q9BQE6 289 aaPredicted RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 PABPC3Q9H361 631 aaKnown RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 PIH1D1Q9NWS0 290 aaKnown RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 NUDT5Q9UKK9 219 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 ATRNL1Q5VV63 1379 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 FZD9O00144 591 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 PRKCIP41743 596 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 FSCN1Q16658 493 aaKnown RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 MFSD7Q6UXD7 560 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 ADGRF2Q8IZF7 708 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 TGS1Q96RS0 853 aaKnown RBP11.7□□□□□ -0.54
PTPRF-204ENST00000412568 BFARQ9NZS9 450 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 CNTNAP1P78357 1384 aa11.7□□□□□ -0.54
PTPRF-204ENST00000412568 KBTBD13C9JR72 458 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 MAFO75444 373 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-204ENST00000412568 AGTP01019 485 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 THP07101 528 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 PMLP29590 882 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 RPL7AP62424 266 aaKnown RBP11.69□□□□□ -0.54
PTPRF-204ENST00000412568 RBBP5Q15291 538 aaKnown RBP11.69□□□□□ -0.54
PTPRF-204ENST00000412568 HGSNATQ68CP4 663 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 C12orf29Q8N999 325 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 XPO6Q96QU8 1125 aaKnown RBP11.69□□□□□ -0.54
PTPRF-204ENST00000412568 TTYH3Q9C0H2 523 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 XPNPEP1Q9NQW7 623 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 CHST7Q9NS84 486 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 ZNF536O15090 1300 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 DUOX1Q9NRD9 1551 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 OPHN1O60890 802 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 ATXN8OSP0DMR3 200 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 FMO1Q01740 532 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 POU5F1BQ06416 359 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 STILQ15468 1287 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 PCSK7Q16549 785 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 PTGISQ16647 500 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 DCAF4L1Q3SXM0 396 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 ZACNQ401N2 412 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 MDH1BQ5I0G3 518 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 FBXW10Q5XX13 1052 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 CAVIN3Q969G5 261 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 PGLYRP2Q96PD5 576 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 APOL2Q9BQE5 337 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 CAND2O75155 1236 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 PCSK1P29120 753 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 SP2Q02086 613 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 BMT2Q1RMZ1 405 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 DENND1BQ6P3S1 775 aa11.69□□□□□ -0.54
PTPRF-204ENST00000412568 FOXR1Q6PIV2 292 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms