RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PCED1BQ96HM7 432 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 MAGED2Q9UNF1 606 aaPredicted RBP20.38■□□□□ 0.85
SF3A1-202ENST00000411423 PCDHA5Q9Y5H7 936 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 NUP210Q8TEM1 1887 aaPredicted RBP20.38■□□□□ 0.85
SF3A1-202ENST00000411423 SLC38A8A6NNN8 435 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 NOL4O94818 638 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 PSMC3P17980 439 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 BDNFP23560 247 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 GDI1P31150 447 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 HOXD11P31277 338 aaPredicted RBP20.37■□□□□ 0.85
SF3A1-202ENST00000411423 GNL1P36915 607 aaPredicted RBP20.37■□□□□ 0.85
SF3A1-202ENST00000411423 PMS1P54277 932 aaKnown RBP20.37■□□□□ 0.85
SF3A1-202ENST00000411423 TNNC1P63316 161 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 PPP3CAQ08209 521 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 MDH1BQ5I0G3 518 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 SCARA5Q6ZMJ2 495 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 MFSD6LQ8IWD5 586 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 PJA1Q8NG27 643 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 RIN3Q8TB24 985 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 SYAP1Q96A49 352 aaPredicted RBP20.37■□□□□ 0.85
SF3A1-202ENST00000411423 PRRX2Q99811 253 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 TRMT61BQ9BVS5 477 aaKnown RBP20.37■□□□□ 0.85
SF3A1-202ENST00000411423 GPR88Q9GZN0 384 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 TASP1Q9H6P5 420 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.37■□□□□ 0.857e-7■■■■■ 65.7
SF3A1-202ENST00000411423 MYO15AQ9UKN7 3530 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 DENND4CQ5VZ89 1909 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 TICRRQ7Z2Z1 1910 aa20.37■□□□□ 0.85
SF3A1-202ENST00000411423 GOLGA6L4A6NEF3 574 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 MAPK13O15264 365 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 KIF20AO95235 890 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 CDC25CP30307 473 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 MAGEA11P43364 429 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 VAMP7P51809 220 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 NUBP1P53384 320 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 AP3M2P53677 418 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 ZNF699Q32M78 642 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 TPRG1Q6ZUI0 275 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 SCN4BQ8IWT1 228 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 DTWD2Q8NBA8 298 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 MYCBPAPQ8TBZ2 947 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 FUBP3Q96I24 572 aaKnown RBP eCLIP20.36■□□□□ 0.85
SF3A1-202ENST00000411423 SNX25Q9H3E2 840 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 BRD9Q9H8M2 597 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 MAGEC2Q9UBF1 373 aaPredicted RBP20.36■□□□□ 0.85
SF3A1-202ENST00000411423 FRMD4BQ9Y2L6 1034 aa20.36■□□□□ 0.85
SF3A1-202ENST00000411423 GREB1Q4ZG55 1949 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 KANSL1LA0AUZ9 987 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 CLDN5O00501 218 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 FGF19O95750 216 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 HLA-DRAP01903 254 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 FAM163BP0C2L3 166 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 CSH1P0DML2 217 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 CSH2P0DML3 217 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 PTPN1P18031 435 aaKnown RBP20.35■□□□□ 0.85
SF3A1-202ENST00000411423 USP46P62068 366 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 RPL10AP62906 217 aaKnown RBP20.35■□□□□ 0.85
SF3A1-202ENST00000411423 PFKPQ01813 784 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 CYP27A1Q02318 531 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 PRKCQQ04759 706 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 ADAM9Q13443 819 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 ZNF658Q5TYW1 1059 aaPredicted RBP20.35■□□□□ 0.85
SF3A1-202ENST00000411423 TXNDC8Q6A555 127 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 FAM186BQ8IYM0 893 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 DEPDC1BQ8WUY9 529 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 ZFYVE19Q96K21 471 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 TIGD1Q96MW7 591 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 B3GNT5Q9BYG0 378 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 APOBEC3GQ9HC16 384 aaKnown RBP20.35■□□□□ 0.85
SF3A1-202ENST00000411423 HMGXB4Q9UGU5 601 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 CCL26Q9Y258 94 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 SIT1Q9Y3P8 196 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 DMDP11532 3685 aa20.35■□□□□ 0.85
SF3A1-202ENST00000411423 A8MXQ7 604 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 IKBKBO14920 756 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 TARSP26639 723 aaKnown RBP20.34■□□□□ 0.85
SF3A1-202ENST00000411423 GCLMP48507 274 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 MCCD1P59942 119 aaPredicted RBP20.34■□□□□ 0.85
SF3A1-202ENST00000411423 FCHO2Q0JRZ9 810 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 ORC1Q13415 861 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 FZD5Q13467 585 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 TAF12Q16514 161 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 ARHGAP15Q53QZ3 475 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 ZNF667Q5HYK9 610 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 ISM2Q6H9L7 571 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 C4orf50Q6ZRC1 276 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 ALYREFQ86V81 257 aaKnown RBP20.34■□□□□ 0.85
SF3A1-202ENST00000411423 ZNF687Q8N1G0 1237 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 MAB21L3Q8N8X9 362 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 DNASE1L2Q92874 299 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 MYRFLQ96LU7 910 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 GSDMAQ96QA5 445 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 ZNF518BQ9C0D4 1074 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 LTB4R2Q9NPC1 389 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 VPS13AQ96RL7 3174 aa20.34■□□□□ 0.85
SF3A1-202ENST00000411423 USP34Q70CQ2 3546 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 KIF26AQ9ULI4 1882 aaPredicted RBP20.33■□□□□ 0.85
SF3A1-202ENST00000411423 TRIM49BA6NDI0 452 aa20.33■□□□□ 0.85
SF3A1-202ENST00000411423 ASS1P00966 412 aaKnown RBP20.33■□□□□ 0.85
SF3A1-202ENST00000411423 CD44P16070 742 aaKnown RBP20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms