RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 MRPL9Q9BYD2 267 aaKnown RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 LHX5Q9H2C1 402 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 FAM124BQ9H5Z6 455 aaPredicted RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 PARVAQ9NVD7 372 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 ABHD14A-ACY1A0A1B0GW23 586 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 E5RJQ4 531 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 KCNK3O14649 394 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 GABRDO14764 452 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 TRAPPC3O43617 180 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 SPOPO43791 374 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 GRAP2O75791 330 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 ERBB2P04626 1255 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 LCP1P13796 627 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 TKTP29401 623 aaKnown RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 AARSP49588 968 aaKnown RBP eCLIP3.92□□□□□ -1.785e-8■■■□□ 16.6
RTN4-208ENST00000404909 ARPP19P56211 112 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 SLC8A3P57103 927 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 RPL7AP62424 266 aaKnown RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 PTP4A2Q12974 167 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 STILQ15468 1287 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 DAB2IPQ5VWQ8 1189 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 OR6B2Q6IFH4 312 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 LIMS2Q7Z4I7 341 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 TMEM173Q86WV6 379 aaPredicted RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 CPNE8Q86YQ8 564 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 CRIPAKQ8N1N5 446 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 THEM5Q8N1Q8 247 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 LRRC43Q8N309 656 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 LRRC57Q8N9N7 239 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 MSANTD4Q8NCY6 345 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 PCED1BQ96HM7 432 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 SUSD3Q96L08 255 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 MCEEQ96PE7 176 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 CARD6Q9BX69 1037 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 TLR10Q9BXR5 811 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 RHOBTB2Q9BYZ6 727 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 MIS12Q9H081 205 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 MRPL47Q9HD33 250 aaKnown RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 CRTAC1Q9NQ79 661 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 RNF216Q9NWF9 866 aaPredicted RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 UVRAGQ9P2Y5 699 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 ADAM28Q9UKQ2 775 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 AMFRQ9UKV5 643 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 DSEQ9UL01 958 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 ZMYND8Q9ULU4 1186 aaPredicted RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 USTQ9Y2C2 406 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 ALG6Q9Y672 507 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 SCINQ9Y6U3 715 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 TDRD15B5MCY1 1934 aaKnown RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 PDCD11Q14690 1871 aaKnown RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 M0QZQ0 153 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 GALTP07902 379 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 PFKMP08237 780 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 OR4Q2P0C623 313 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 KRT3P12035 628 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 COMTP21964 271 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 CDH5P33151 784 aaPredicted RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 BCAT1P54687 386 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 MAP3K7CLP57077 242 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 WDR5P61964 334 aaKnown RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 TSPY1Q01534 308 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 BTG3Q14201 252 aaPredicted RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 FAM102AQ5T9C2 384 aaPredicted RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 PPP1R2P3Q6NXS1 205 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 ZNF365Q70YC5 407 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 SCUBE3Q8IX30 993 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 FUKQ8N0W3 1084 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 ANKRD52Q8NB46 1076 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 MNS1Q8NEH6 495 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 COG1Q8WTW3 980 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 TOP1MTQ969P6 601 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 VCPIP1Q96JH7 1222 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 TMEM209Q96SK2 561 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 OSBPL9Q96SU4 736 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 YME1L1Q96TA2 773 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 SELENOOQ9BVL4 669 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 COLEC11Q9BWP8 271 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 B3GNT5Q9BYG0 378 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 GPR62Q9BZJ7 368 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 KRT82Q9NSB4 513 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.92□□□□□ -1.78
RTN4-208ENST00000404909 STRIP2Q9ULQ0 834 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 MRFAP1Q9Y605 127 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 V9GYY5 206 aaPredicted RBP3.92□□□□□ -1.78
RTN4-208ENST00000404909 MYO7AQ13402 2215 aa3.92□□□□□ -1.78
RTN4-208ENST00000404909 ATP8B3O60423 1300 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 ARHGEF37A1IGU5 675 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 C2CD2LO14523 706 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 AP1G2O75843 785 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 DGKIO75912 1065 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 BEST1O76090 585 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 FAM200BP0CF97 657 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 GJC1P36383 396 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 AMPD2Q01433 879 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 FPGSQ05932 587 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 BST2Q10589 180 aaKnown RBP3.91□□□□□ -1.78
RTN4-208ENST00000404909 ZFYVE27Q5T4F4 411 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 MEI1Q5TIA1 1274 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 CCDC181Q5TID7 509 aa3.91□□□□□ -1.78
RTN4-208ENST00000404909 PAPD7Q5XG87 772 aaKnown RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms