RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 KRT39Q6A163 491 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 SCARA3Q6AZY7 606 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 DPY19L2P1Q6NXN4 242 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 RSPO2Q6UXX9 243 aaPredicted RBP9.87□□□□□ -0.83
VPS53-203ENST00000401468 GET4Q7L5D6 327 aaPredicted RBP9.87□□□□□ -0.83
VPS53-203ENST00000401468 TRAPPC11Q7Z392 1133 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 ZNF511Q8NB15 262 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 C3orf58Q8NDZ4 430 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 LMO3Q8TAP4 145 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 SMG7Q92540 1137 aaKnown RBP9.87□□□□□ -0.83
VPS53-203ENST00000401468 FAXDC2Q96IV6 333 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 ANKRD36BP1Q96IX9 119 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 COLEC11Q9BWP8 271 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 XYLT2Q9H1B5 865 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 SFXN1Q9H9B4 322 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.87□□□□□ -0.83
VPS53-203ENST00000401468 FRYLO94915 3013 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 GREB1Q4ZG55 1949 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 ANAPC1Q9H1A4 1944 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 BECN2A8MW95 431 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 CCL16O15467 120 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 GLUD1P00367 558 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 ASS1P00966 412 aaKnown RBP9.86□□□□□ -0.83
VPS53-203ENST00000401468 CST3P01034 146 aaPredicted RBP9.86□□□□□ -0.83
VPS53-203ENST00000401468 AFPP02771 609 aaKnown RBP9.86□□□□□ -0.83
VPS53-203ENST00000401468 ITGB3P05106 788 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 ADH1AP07327 375 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 TMEM191BP0C7N4 346 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 DLATP10515 647 aaKnown RBP9.86□□□□□ -0.83
VPS53-203ENST00000401468 TKTP29401 623 aaKnown RBP9.86□□□□□ -0.83
VPS53-203ENST00000401468 ATICP31939 592 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 GCLMP48507 274 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 MXI1P50539 228 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 GUCY2FP51841 1108 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 COPB1P53618 953 aaKnown RBP9.86□□□□□ -0.83
VPS53-203ENST00000401468 ARPP19P56211 112 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 TFAMQ00059 246 aaKnown RBP9.86□□□□□ -0.83
VPS53-203ENST00000401468 DSG1Q02413 1049 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 ITIH3Q06033 890 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 SIGLEC14Q08ET2 396 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 VWA3BQ502W6 1294 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 LMBRD2Q68DH5 695 aaPredicted RBP9.86□□□□□ -0.83
VPS53-203ENST00000401468 DCLRE1AQ6PJP8 1040 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 GPR149Q86SP6 731 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 FBXL13Q8NEE6 735 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 TAS1R2Q8TE23 839 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 ING5Q8WYH8 240 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 TAF4BQ92750 862 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 RIPOR3Q96MK2 946 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 MYADMQ96S97 322 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 NDST4Q9H3R1 872 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 PIDD1Q9HB75 910 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 DZANK1Q9NVP4 752 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 HCFC1R1Q9NWW0 138 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 GDAP2Q9NXN4 497 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 POLIQ9UNA4 740 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 NR2E1Q9Y466 385 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 IRAK3Q9Y616 596 aa9.86□□□□□ -0.83
VPS53-203ENST00000401468 NUP210Q8TEM1 1887 aaPredicted RBP9.85□□□□□ -0.83
VPS53-203ENST00000401468 MYO16Q9Y6X6 1858 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 A0A1B0GTH6 734 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 LGALS16A8MUM7 142 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 H0Y858 1186 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 M0QZQ0 153 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 PODXLO00592 558 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 PPEF2O14830 753 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 WFS1O76024 890 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 PNPLA4P41247 253 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 MTIF2P46199 727 aaKnown RBP9.85□□□□□ -0.83
VPS53-203ENST00000401468 LILRA4P59901 499 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 RBP5P82980 135 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 NCOA4Q13772 614 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 PSMD5Q16401 504 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 USP41Q3LFD5 358 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 DCAF17Q5H9S7 520 aaPredicted RBP9.85□□□□□ -0.83
VPS53-203ENST00000401468 SARM1Q6SZW1 724 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 LYPD8Q6UX82 237 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 CCDC149Q6ZUS6 474 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 SUGP1Q8IWZ8 645 aaKnown RBP9.85□□□□□ -0.83
VPS53-203ENST00000401468 GPR65Q8IYL9 337 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 FBXL6Q8N531 539 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 FLCNQ8NFG4 579 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 SPATA18Q8TC71 538 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 ZNF707Q96C28 371 aaPredicted RBP9.85□□□□□ -0.83
VPS53-203ENST00000401468 FAM84AQ96KN4 292 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 ERGIC2Q96RQ1 377 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 CLSTN3Q9BQT9 956 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 RBSNQ9H1K0 784 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 FAM124BQ9H5Z6 455 aaPredicted RBP9.85□□□□□ -0.83
VPS53-203ENST00000401468 MAGEC2Q9UBF1 373 aaPredicted RBP9.85□□□□□ -0.83
VPS53-203ENST00000401468 STK39Q9UEW8 545 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 MYOFQ9NZM1 2061 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 MYO15AQ9UKN7 3530 aa9.85□□□□□ -0.83
VPS53-203ENST00000401468 CACNA1HO95180 2353 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 FSD2A1L4K1 749 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 GOLGA6L19H0YKK7 550 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 PI15O43692 258 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 KRT37O76014 449 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 HLA-DRAP01903 254 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 CYP11A1P05108 521 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms