RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 HAUS5O94927 633 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 TJP3O95049 919 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 MYL2P10916 166 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 ARL4CP56559 192 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 IRX4P78413 519 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 CCDC142Q17RM4 750 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 SLC45A4Q5BKX6 768 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 ZBTB33Q86T24 672 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 WDTC1Q8N5D0 677 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 PTCD3Q96EY7 689 aaKnown RBP22.02■■□□□ 1.12
CTCF-202ENST00000401394 ZNF70Q9UC06 446 aaPredicted RBP22.02■■□□□ 1.12
CTCF-202ENST00000401394 C2CD2Q9Y426 696 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 RFC1P35251 1148 aaPredicted RBP22.02■■□□□ 1.12
CTCF-202ENST00000401394 TREML1Q86YW5 311 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 DCAKDQ8WVC6 231 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 CYTH2Q99418 400 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 TSSK1BQ9BXA7 367 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 RBAKQ9NYW8 714 aaPredicted RBP22.02■■□□□ 1.12
CTCF-202ENST00000401394 FBXO40Q9UH90 709 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 AGTPBP1Q9UPW5 1226 aa22.02■■□□□ 1.12
CTCF-202ENST00000401394 WDR64B1ANS9 1081 aa22.02■■□□□ 1.11
CTCF-202ENST00000401394 ARFIP2P53365 341 aa22.02■■□□□ 1.11
CTCF-202ENST00000401394 MMRN1Q13201 1228 aa22.02■■□□□ 1.11
CTCF-202ENST00000401394 VPS52Q8N1B4 723 aa22.02■■□□□ 1.11
CTCF-202ENST00000401394 AGO2Q9UKV8 859 aaKnown RBP22.02■■□□□ 1.11
CTCF-202ENST00000401394 ANKRD31Q8N7Z5 1873 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 LRRIQ4A6NIV6 560 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 IRX1P78414 480 aaPredicted RBP22.01■■□□□ 1.11
CTCF-202ENST00000401394 KDSRQ06136 332 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 KBTBD12Q3ZCT8 623 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 EFHC2Q5JST6 749 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 PALM2Q8IXS6 379 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 BANPQ8N9N5 519 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 FAM136AQ96C01 138 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 PDCD2LQ9BRP1 358 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 BTBD10Q9BSF8 475 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 PARVAQ9NVD7 372 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 SORBS2O94875 1100 aaKnown RBP22.01■■□□□ 1.11
CTCF-202ENST00000401394 ENO1P06733 434 aaKnown RBP22.01■■□□□ 1.11
CTCF-202ENST00000401394 KLC1Q07866 573 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 BMPR2Q13873 1038 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 BAATQ14032 418 aaPredicted RBP22.01■■□□□ 1.11
CTCF-202ENST00000401394 LRRC36Q1X8D7 754 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 PPP1R15BQ5SWA1 713 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 SH3PXD2AQ5TCZ1 1133 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 ARHGEF16Q5VV41 709 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 FYB2Q5VWT5 728 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 RCOR2Q8IZ40 523 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 IWS1Q96ST2 819 aa22.01■■□□□ 1.11
CTCF-202ENST00000401394 MRPL47Q9HD33 250 aaKnown RBP22.01■■□□□ 1.11
CTCF-202ENST00000401394 CNTNAP1P78357 1384 aa22■■□□□ 1.11
CTCF-202ENST00000401394 LPXNO60711 386 aa22■■□□□ 1.11
CTCF-202ENST00000401394 STBD1O95210 358 aa22■■□□□ 1.11
CTCF-202ENST00000401394 LUC7L3O95232 432 aaKnown RBP22■■□□□ 1.11
CTCF-202ENST00000401394 MMP8P22894 467 aa22■■□□□ 1.11
CTCF-202ENST00000401394 POLE2P56282 527 aa22■■□□□ 1.11
CTCF-202ENST00000401394 MORF4L2Q15014 288 aa22■■□□□ 1.11
CTCF-202ENST00000401394 TDRPQ86YL5 185 aa22■■□□□ 1.11
CTCF-202ENST00000401394 RIBC1Q8N443 379 aaPredicted RBP22■■□□□ 1.11
CTCF-202ENST00000401394 MCUR1Q96AQ8 359 aa22■■□□□ 1.11
CTCF-202ENST00000401394 FAM81BQ96LP2 452 aa22■■□□□ 1.11
CTCF-202ENST00000401394 ACAP3Q96P50 834 aa22■■□□□ 1.11
CTCF-202ENST00000401394 TSC22D3Q99576 134 aa22■■□□□ 1.11
CTCF-202ENST00000401394 ARHGEF4Q9NR80 690 aa22■■□□□ 1.11
CTCF-202ENST00000401394 SPDYE2BA6NHP3 402 aa22■■□□□ 1.11
CTCF-202ENST00000401394 F5H423 210 aaPredicted RBP22■■□□□ 1.11
CTCF-202ENST00000401394 H3BRJ5 948 aa22■■□□□ 1.11
CTCF-202ENST00000401394 ATP5HO75947 161 aa22■■□□□ 1.11
CTCF-202ENST00000401394 SPDYE6P0CI01 402 aa22■■□□□ 1.11
CTCF-202ENST00000401394 ELK3P41970 407 aa22■■□□□ 1.11
CTCF-202ENST00000401394 RASSF2P50749 326 aa22■■□□□ 1.11
CTCF-202ENST00000401394 OSTNP61366 133 aa22■■□□□ 1.11
CTCF-202ENST00000401394 TFDP3Q5H9I0 405 aa22■■□□□ 1.11
CTCF-202ENST00000401394 GPAT2Q6NUI2 795 aa22■■□□□ 1.11
CTCF-202ENST00000401394 DNAJC24Q6P3W2 148 aa22■■□□□ 1.11
CTCF-202ENST00000401394 RGS9BPQ6ZS82 235 aa22■■□□□ 1.11
CTCF-202ENST00000401394 LMNTD2Q8IXW0 634 aa22■■□□□ 1.11
CTCF-202ENST00000401394 SLC13A1Q9BZW2 595 aa22■■□□□ 1.11
CTCF-202ENST00000401394 DCLRE1BQ9H816 532 aa22■■□□□ 1.11
CTCF-202ENST00000401394 XPO7Q9UIA9 1087 aaKnown RBP22■■□□□ 1.11
CTCF-202ENST00000401394 FARP1Q9Y4F1 1045 aaPredicted RBP22■■□□□ 1.11
CTCF-202ENST00000401394 RAP1GAPP47736 663 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 ZCCHC23Q6ZST2 131 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 SHCBP1LQ9BZQ2 653 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 C20orf27Q9GZN8 174 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 KRT82Q9NSB4 513 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 CYTH4Q9UIA0 394 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 FEM1BQ9UK73 627 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 LRRC37AA6NMS7 1700 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 MEI4A8MW99 385 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 RGS20O76081 388 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 DLDP09622 509 aaKnown RBP21.99■■□□□ 1.11
CTCF-202ENST00000401394 GMPRP36959 345 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 FSTL1Q12841 308 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 SPDYE2Q495Y8 402 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 EFCAB3Q8N7B9 438 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 HSPH1Q92598 858 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 FAM161BQ96MY7 647 aa21.99■■□□□ 1.11
CTCF-202ENST00000401394 QTRT2Q9H974 415 aaKnown RBP21.99■■□□□ 1.11
CTCF-202ENST00000401394 UBR3Q6ZT12 1888 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms