RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 HPS4Q9NQG7 708 aa30.63■■■□□ 2.49
HMGB1-205ENST00000399494 EXOC7Q9UPT5 735 aa30.63■■■□□ 2.49
HMGB1-205ENST00000399494 KIF26AQ9ULI4 1882 aaPredicted RBP30.63■■■□□ 2.49
HMGB1-205ENST00000399494 LOC105378220A0A1B0GUY1 285 aaPredicted RBP30.62■■■□□ 2.49
HMGB1-205ENST00000399494 SLC30A4O14863 429 aa30.62■■■□□ 2.49
HMGB1-205ENST00000399494 EXTL3O43909 919 aa30.62■■■□□ 2.49
HMGB1-205ENST00000399494 CASP1P29466 404 aa30.62■■■□□ 2.49
HMGB1-205ENST00000399494 RUNX3Q13761 415 aa30.62■■■□□ 2.49
HMGB1-205ENST00000399494 PRR23CQ6ZRP0 262 aa30.62■■■□□ 2.49
HMGB1-205ENST00000399494 GRAMD1CQ8IYS0 662 aa30.62■■■□□ 2.49
HMGB1-205ENST00000399494 FAM160A2Q8N612 972 aaPredicted RBP30.62■■■□□ 2.49
HMGB1-205ENST00000399494 ZSWIM2Q8NEG5 633 aa30.62■■■□□ 2.49
HMGB1-205ENST00000399494 ACCSQ96QU6 501 aa30.62■■■□□ 2.49
HMGB1-205ENST00000399494 FAM237AA0A1B0GTK4 181 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 OTOL1A6NHN0 477 aaPredicted RBP30.61■■■□□ 2.49
HMGB1-205ENST00000399494 SOBPA7XYQ1 873 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 DDX6P26196 483 aaKnown RBP eCLIP30.61■■■□□ 2.49
HMGB1-205ENST00000399494 AVPR1AP37288 418 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 PNPLA4P41247 253 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 GPR15P49685 360 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 TMEM196Q5HYL7 178 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 L1TD1Q5T7N2 865 aaKnown RBP30.61■■■□□ 2.49
HMGB1-205ENST00000399494 TXNDC8Q6A555 127 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 PKN3Q6P5Z2 889 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 CHFRQ96EP1 664 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 PAGE5Q96GU1 130 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 ZNF560Q96MR9 790 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 FAM213AQ9BRX8 229 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 PI4K2AQ9BTU6 479 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 TDP1Q9NUW8 608 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 SPTBN2O15020 2390 aa30.61■■■□□ 2.49
HMGB1-205ENST00000399494 PRPF40AO75400 957 aaKnown RBP30.6■■■□□ 2.49
HMGB1-205ENST00000399494 CASP5P51878 434 aa30.6■■■□□ 2.49
HMGB1-205ENST00000399494 CUL4BQ13620 913 aa30.6■■■□□ 2.49
HMGB1-205ENST00000399494 SCARA3Q6AZY7 606 aa30.6■■■□□ 2.49
HMGB1-205ENST00000399494 FSTL4Q6MZW2 842 aa30.6■■■□□ 2.49
HMGB1-205ENST00000399494 UNC13DQ70J99 1090 aa30.6■■■□□ 2.49
HMGB1-205ENST00000399494 CEP68Q76N32 757 aa30.6■■■□□ 2.49
HMGB1-205ENST00000399494 SYCP3Q8IZU3 236 aa30.6■■■□□ 2.49
HMGB1-205ENST00000399494 GOLPH3LQ9H4A5 285 aa30.6■■■□□ 2.49
HMGB1-205ENST00000399494 AGAP1Q9UPQ3 857 aa30.6■■■□□ 2.49
HMGB1-205ENST00000399494 TRDMT1O14717 391 aaKnown RBP30.59■■■□□ 2.49
HMGB1-205ENST00000399494 TFAMQ00059 246 aaKnown RBP30.59■■■□□ 2.49
HMGB1-205ENST00000399494 TSPY1Q01534 308 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 NFE2Q16621 373 aaPredicted RBP30.59■■■□□ 2.49
HMGB1-205ENST00000399494 TRIM68Q6AZZ1 485 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 MON1AQ86VX9 555 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 PDCL2Q8N4E4 241 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 C1orf127Q8N9H9 656 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 STKLD1Q8NE28 680 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 CXorf38Q8TB03 319 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 ACBD6Q9BR61 282 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 FGFBP2Q9BYJ0 223 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 EBF3Q9H4W6 596 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 L1RE1Q9UN81 338 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 DENND4CQ5VZ89 1909 aa30.59■■■□□ 2.49
HMGB1-205ENST00000399494 GDF9O60383 454 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 ITGB3P05106 788 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 CSH1P0DML2 217 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 CSH2P0DML3 217 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 POLR2BP30876 1174 aaKnown RBP30.58■■■□□ 2.49
HMGB1-205ENST00000399494 BFSP1Q12934 665 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 FAM26FQ5R3K3 315 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 SDHAF4Q5VUM1 108 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 RIN3Q8TB24 985 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 HPS3Q969F9 1004 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 SAAL1Q96ER3 474 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 KIF9Q9HAQ2 790 aa30.58■■■□□ 2.49
HMGB1-205ENST00000399494 MAGED2Q9UNF1 606 aaPredicted RBP30.58■■■□□ 2.49
HMGB1-205ENST00000399494 PVALEFA0A1B0GWK0 134 aa30.57■■■□□ 2.48
HMGB1-205ENST00000399494 GRSF1Q12849 480 aaKnown RBP eCLIP30.57■■■□□ 2.48
HMGB1-205ENST00000399494 DDR2Q16832 855 aa30.57■■■□□ 2.48
HMGB1-205ENST00000399494 BRSK2Q8IWQ3 736 aa30.57■■■□□ 2.48
HMGB1-205ENST00000399494 CACTINQ8WUQ7 758 aaKnown RBP30.57■■■□□ 2.48
HMGB1-205ENST00000399494 MRPS31Q92665 395 aaKnown RBP30.57■■■□□ 2.48
HMGB1-205ENST00000399494 CCDC34Q96HJ3 373 aa30.57■■■□□ 2.48
HMGB1-205ENST00000399494 PKMYT1Q99640 499 aa30.57■■■□□ 2.48
HMGB1-205ENST00000399494 FBRSL1Q9HCM7 1045 aaKnown RBP30.57■■■□□ 2.48
HMGB1-205ENST00000399494 CCDC163A0A0D9SF12 145 aa30.56■■■□□ 2.48
HMGB1-205ENST00000399494 HUS1O60921 280 aa30.56■■■□□ 2.48
HMGB1-205ENST00000399494 PRPF6O94906 941 aaKnown RBP30.56■■■□□ 2.48
HMGB1-205ENST00000399494 ZNF202O95125 648 aa30.56■■■□□ 2.48
HMGB1-205ENST00000399494 LDHAP00338 332 aaKnown RBP30.56■■■□□ 2.48
HMGB1-205ENST00000399494 ADRB1P08588 477 aa30.56■■■□□ 2.48
HMGB1-205ENST00000399494 CYP2F1P24903 491 aa30.56■■■□□ 2.48
HMGB1-205ENST00000399494 PXNP49023 591 aaPredicted RBP30.56■■■□□ 2.48
HMGB1-205ENST00000399494 ZNF268Q14587 947 aaPredicted RBP30.56■■■□□ 2.48
HMGB1-205ENST00000399494 KRBA2Q6ZNG9 492 aa30.56■■■□□ 2.48
HMGB1-205ENST00000399494 TMEM206Q9H813 350 aa30.56■■■□□ 2.48
HMGB1-205ENST00000399494 DDX43Q9NXZ2 648 aaKnown RBP30.56■■■□□ 2.48
HMGB1-205ENST00000399494 TULP1O00294 542 aaPredicted RBP30.55■■■□□ 2.48
HMGB1-205ENST00000399494 FOXD2O60548 495 aaPredicted RBP30.55■■■□□ 2.48
HMGB1-205ENST00000399494 ATG13O75143 517 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 MYL1P05976 194 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 ARSAP15289 507 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 GARTP22102 1010 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 RPL10AP62906 217 aaKnown RBP30.55■■■□□ 2.48
HMGB1-205ENST00000399494 PPM1JQ5JR12 505 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 TMEM86AQ8N2M4 240 aa30.55■■■□□ 2.48
HMGB1-205ENST00000399494 CSGALNACT2Q8N6G5 542 aa30.55■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms