RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 MLLT6P55198 1093 aaPredicted RBP11.11□□□□□ -0.63
NEDD8-202ENST00000396828 PON2Q15165 354 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 DPCR1Q3MIW9 517 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 SDHAF4Q5VUM1 108 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 PKN3Q6P5Z2 889 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 YAF2Q8IY57 180 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 CXorf38Q8TB03 319 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 FAM200AQ8TCP9 573 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 DNAJC19Q96DA6 116 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 SAAL1Q96ER3 474 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 TSPAN18Q96SJ8 248 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 ASB7Q9H672 318 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 POLR3BQ9NW08 1133 aaPredicted RBP11.11□□□□□ -0.63
NEDD8-202ENST00000396828 DERAQ9Y315 318 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 C2CD2Q9Y426 696 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 ASB3Q9Y575 518 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 ATG2BQ96BY7 2078 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 EPG5Q9HCE0 2579 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 FRMD3A2A2Y4 597 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 DCDC2BA2VCK2 349 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 KPNA7A9QM74 516 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 TULP1O00294 542 aaPredicted RBP11.1□□□□□ -0.63
NEDD8-202ENST00000396828 KIF20AO95235 890 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 HAPLN1P10915 354 aaPredicted RBP11.1□□□□□ -0.63
NEDD8-202ENST00000396828 HMGA1P17096 107 aaKnown RBP11.1□□□□□ -0.63
NEDD8-202ENST00000396828 TAF6P49848 677 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 ZNF165P49910 485 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 CCR3P51677 355 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 SPEM2Q0P670 501 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 CCINQ13939 588 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 FAM26FQ5R3K3 315 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 NAIF1Q69YI7 327 aaPredicted RBP11.1□□□□□ -0.63
NEDD8-202ENST00000396828 HEATR6Q6AI08 1181 aaKnown RBP11.1□□□□□ -0.63
NEDD8-202ENST00000396828 TRIM68Q6AZZ1 485 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 PRR23BQ6ZRT6 265 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 OSTM1Q86WC4 334 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 POMGNT1Q8WZA1 660 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 E2F7Q96AV8 911 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 FAM213AQ9BRX8 229 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 FAM126AQ9BYI3 521 aaPredicted RBP11.1□□□□□ -0.63
NEDD8-202ENST00000396828 TASP1Q9H6P5 420 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 HPS4Q9NQG7 708 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 ABI2Q9NYB9 513 aaPredicted RBP11.1□□□□□ -0.63
NEDD8-202ENST00000396828 HSFX1Q9UBD0 423 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 SEL1LQ9UBV2 794 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 USP18Q9UMW8 372 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.1□□□□□ -0.63
NEDD8-202ENST00000396828 KMT2BQ9UMN6 2715 aaPredicted RBP11.1□□□□□ -0.63
NEDD8-202ENST00000396828 FRYQ5TBA9 3013 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 ASPMQ8IZT6 3477 aa11.1□□□□□ -0.63
NEDD8-202ENST00000396828 SDK1Q7Z5N4 2213 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 WDFY3Q8IZQ1 3526 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 CHD8Q9HCK8 2581 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 GOLGA8IPA6NC78 632 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 GOLGA8JA6NMD2 632 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 BECN2A8MW95 431 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 PSMA7O14818 248 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 EXTL3O43909 919 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 F11P03951 625 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 ITGB3P05106 788 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 BMP6P22004 513 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 SCP2P22307 547 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 ACAT1P24752 427 aaKnown RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 POLR2BP30876 1174 aaKnown RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 PXNP49023 591 aaPredicted RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 TUFMP49411 452 aaKnown RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 ARHGAP29Q52LW3 1261 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 L1TD1Q5T7N2 865 aaKnown RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 TXNDC8Q6A555 127 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 SLFN12LQ6IEE8 588 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 C11orf57Q6ZUT1 292 aaPredicted RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 STXBP4Q6ZWJ1 553 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 ITIH5Q86UX2 942 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 RALGPS2Q86X27 583 aaPredicted RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 METTL23Q86XA0 190 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 GAS2L3Q86XJ1 694 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 CMTM8Q8IZV2 173 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 SPEM1Q8N4L4 309 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 MAB21L3Q8N8X9 362 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 C1orf127Q8N9H9 656 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 GLIS3Q8NEA6 775 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 BPIFB1Q8TDL5 484 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 USP13Q92995 863 aaPredicted RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 FAM83CQ9BQN1 747 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 BPIFA3Q9BQP9 254 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 PI4K2AQ9BTU6 479 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 C8orf33Q9H7E9 229 aaPredicted RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 MRPL44Q9H9J2 332 aaKnown RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 FBRSL1Q9HCM7 1045 aaKnown RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 GKN1Q9NS71 199 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 L1RE1Q9UN81 338 aa11.09□□□□□ -0.63
NEDD8-202ENST00000396828 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.09□□□□□ -0.63
NEDD8-202ENST00000396828 ZNF638Q14966 1978 aaKnown RBP11.08□□□□□ -0.64
NEDD8-202ENST00000396828 CFAP47Q6ZTR5 3102 aa11.08□□□□□ -0.64
NEDD8-202ENST00000396828 SMTNL1A8MU46 457 aa11.08□□□□□ -0.64
NEDD8-202ENST00000396828 GOLGA6L19H0YKK7 550 aa11.08□□□□□ -0.64
NEDD8-202ENST00000396828 DPYSL4O14531 572 aa11.08□□□□□ -0.64
NEDD8-202ENST00000396828 TADA3O75528 432 aa11.08□□□□□ -0.64
NEDD8-202ENST00000396828 ARSAP15289 507 aa11.08□□□□□ -0.64
NEDD8-202ENST00000396828 CYP2F1P24903 491 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms