RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 OTOL1A6NHN0 477 aaPredicted RBP17.78■□□□□ 0.44
PTPRK-208ENST00000392449 TNNC2P02585 160 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 HSP90AA1P07900 732 aaKnown RBP17.78■□□□□ 0.44
PTPRK-208ENST00000392449 DLATP10515 647 aaKnown RBP17.78■□□□□ 0.44
PTPRK-208ENST00000392449 ME1P48163 572 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 AMPD3Q01432 767 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 EHHADHQ08426 723 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 CUL4BQ13620 913 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 SNRNP35Q16560 246 aaKnown RBP17.78■□□□□ 0.44
PTPRK-208ENST00000392449 LPAL2Q16609 132 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 CNNM4Q6P4Q7 775 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 SCN4BQ8IWT1 228 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 CELF5Q8N6W0 485 aaKnown RBP17.78■□□□□ 0.44
PTPRK-208ENST00000392449 TTC16Q8NEE8 873 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 CCDC127Q96BQ5 260 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 SLC22A12Q96S37 553 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 C8orf33Q9H7E9 229 aaPredicted RBP17.78■□□□□ 0.44
PTPRK-208ENST00000392449 SLC39A2Q9NP94 309 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 GKN1Q9NS71 199 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 NME7Q9Y5B8 376 aa17.78■□□□□ 0.44
PTPRK-208ENST00000392449 KIAA0391O15091 583 aaKnown RBP17.77■□□□□ 0.44
PTPRK-208ENST00000392449 PDGFRBP09619 1106 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 CSH1P0DML2 217 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 CSH2P0DML3 217 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 WEE1P30291 646 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 AVPR1AP37288 418 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 DNM1Q05193 864 aaKnown RBP17.77■□□□□ 0.44
PTPRK-208ENST00000392449 MYO1EQ12965 1108 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 DUOXA2Q1HG44 320 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 UNC13DQ70J99 1090 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 TRAPPC11Q7Z392 1133 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 RALGPS2Q86X27 583 aaPredicted RBP17.77■□□□□ 0.44
PTPRK-208ENST00000392449 SPATA2LQ8IUW3 424 aaPredicted RBP17.77■□□□□ 0.44
PTPRK-208ENST00000392449 WDR49Q8IV35 697 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 CHFRQ96EP1 664 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 SYT15Q9BQS2 421 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 GZF1Q9H116 711 aaPredicted RBP17.77■□□□□ 0.44
PTPRK-208ENST00000392449 EPC1Q9H2F5 836 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 EBF3Q9H4W6 596 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 TRPC7Q9HCX4 862 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 ABCB6Q9NP58 842 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 CRTAC1Q9NQ79 661 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 HPS4Q9NQG7 708 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 NCDNQ9UBB6 729 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 PTPRDP23468 1912 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 GREB1Q4ZG55 1949 aa17.77■□□□□ 0.44
PTPRK-208ENST00000392449 ANAPC1Q9H1A4 1944 aa17.77■□□□□ 0.43
PTPRK-208ENST00000392449 NOL4O94818 638 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 CST3P01034 146 aaPredicted RBP17.76■□□□□ 0.43
PTPRK-208ENST00000392449 ARSAP15289 507 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 LHX1P48742 406 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 CCR3P51677 355 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 MLLT6P55198 1093 aaPredicted RBP17.76■□□□□ 0.43
PTPRK-208ENST00000392449 CYP24A1Q07973 514 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 RESP18Q5W5W9 173 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 NAIF1Q69YI7 327 aaPredicted RBP17.76■□□□□ 0.43
PTPRK-208ENST00000392449 LIMS2Q7Z4I7 341 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 MYLPFQ96A32 169 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 CYP2S1Q96SQ9 504 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 MMS19Q96T76 1030 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 MRPL45Q9BRJ2 306 aaKnown RBP17.76■□□□□ 0.43
PTPRK-208ENST00000392449 R3HCC1Q9Y3T6 440 aaKnown RBP17.76■□□□□ 0.43
PTPRK-208ENST00000392449 CEP250Q9BV73 2442 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 ATG2BQ96BY7 2078 aa17.76■□□□□ 0.43
PTPRK-208ENST00000392449 TNNI1P19237 187 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 PCSK1P29120 753 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 CXCL12P48061 93 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 CASP4P49662 377 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 RPL10AP62906 217 aaKnown RBP17.75■□□□□ 0.43
PTPRK-208ENST00000392449 SRSF5Q13243 272 aaKnown RBP17.75■□□□□ 0.43
PTPRK-208ENST00000392449 ITPRIPL2Q3MIP1 535 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 CFAP221Q4G0U5 840 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 PKN3Q6P5Z2 889 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 FAM171BQ6P995 826 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 MON1AQ86VX9 555 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 ZNF516Q92618 1163 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 MRPS31Q92665 395 aaKnown RBP17.75■□□□□ 0.43
PTPRK-208ENST00000392449 ELMO3Q96BJ8 720 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 MSANTD3Q96H12 275 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 CGRRF1Q99675 332 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 FAM83CQ9BQN1 747 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 TDP1Q9NUW8 608 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 THG1LQ9NWX6 298 aaKnown RBP17.75■□□□□ 0.43
PTPRK-208ENST00000392449 SERTAD1Q9UHV2 236 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 CHURC1-FNTBB4DL54 471 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 BDNFP23560 247 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 FNTBP49356 437 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 PLCB2Q00722 1185 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 CYP27A1Q02318 531 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 CCINQ13939 588 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 LRRC32Q14392 662 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 PSMD6Q15008 389 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 SURF1Q15526 300 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 HEATR6Q6AI08 1181 aaKnown RBP17.75■□□□□ 0.43
PTPRK-208ENST00000392449 MAMSTRQ6ZN01 415 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 SPEM1Q8N4L4 309 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 XXYLT1Q8NBI6 393 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 PLEKHO2Q8TD55 490 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 KIAA1586Q9HCI6 787 aa17.75■□□□□ 0.43
PTPRK-208ENST00000392449 FAM13BQ9NYF5 915 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms