RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 KCTD17Q8N5Z5 321 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 TSPAN16Q9UKR8 245 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 WNK3Q9BYP7 1800 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 A0A087X0T9 212 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 PRR23AA6NEV1 266 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 KRIT1O00522 736 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 HCRTO43612 131 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 FAM228BP0C875 321 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 HNRNPH1P31943 449 aaKnown RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 PNPLA4P41247 253 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 GALCP54803 685 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 IRF5Q13568 498 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 SWT1Q5T5J6 900 aaKnown RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 TTC19Q6DKK2 380 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 TMC5Q6UXY8 1006 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 CHRDL2Q6WN34 429 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 ZNF564Q8TBZ8 553 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 RSAD2Q8WXG1 361 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 NDRG1Q92597 394 aaKnown RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 TLE6Q9H808 572 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 DDIT4Q9NX09 232 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 TTC28Q96AY4 2481 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 PALMO75781 387 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 PTPN11Q06124 597 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 C2orf54Q08AI8 447 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 COL13A1Q5TAT6 717 aaPredicted RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 FBXW10Q5XX13 1052 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 APTXQ7Z2E3 356 aaKnown RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 MAATS1Q7Z4T9 603 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 FAM131BQ86XD5 332 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 SPATA20Q8TB22 786 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 DUSP10Q9Y6W6 482 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 BCORQ6W2J9 1755 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 EIF3HO15372 352 aaKnown RBP eCLIP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 CHRNA1P02708 482 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 AXLP30530 894 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 AFF1P51825 1210 aaKnown RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 NCKAP1LP55160 1127 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 ADCY1Q08828 1119 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 SPATS2Q86XZ4 545 aaKnown RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 PGBD3Q8N328 593 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 FGD4Q96M96 766 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 PACSIN1Q9BY11 444 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 MRPL9Q9BYD2 267 aaKnown RBP10.84□□□□□ -0.67
COL6A3-205ENST00000392004 GPATCH2LQ9NWQ4 482 aa10.84□□□□□ -0.67
COL6A3-205ENST00000392004 GVINP1Q7Z2Y8 2422 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 EDIL3O43854 480 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 GPC5P78333 572 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 PSMD6Q15008 389 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 ZC3H18Q86VM9 953 aaKnown RBP10.83□□□□□ -0.68
COL6A3-205ENST00000392004 SEMA4DQ92854 862 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 DDX27Q96GQ7 796 aaKnown RBP10.83□□□□□ -0.68
COL6A3-205ENST00000392004 ABHD8Q96I13 439 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 CABS1Q96KC9 395 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 METTL5Q9NRN9 209 aaKnown RBP10.83□□□□□ -0.68
COL6A3-205ENST00000392004 ZDBF2Q9HCK1 2354 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 CASZ1Q86V15 1759 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 AVPR1AP37288 418 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 SULT1E1P49888 294 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 TUSC3Q13454 348 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 PAPD7Q5XG87 772 aaKnown RBP10.83□□□□□ -0.68
COL6A3-205ENST00000392004 ZNF280BQ86YH2 543 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 TMEM176AQ96HP8 235 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 KCTD10Q9H3F6 313 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 TJP2Q9UDY2 1190 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 DNAJB4Q9UDY4 337 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 TPRP12270 2363 aaKnown RBP10.83□□□□□ -0.68
COL6A3-205ENST00000392004 CCDC78A2IDD5 438 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 SLC26A4O43511 780 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 USP17L7P0C7H9 530 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 MBL2P11226 248 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-205ENST00000392004 FECHP22830 423 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 XPAP23025 273 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-205ENST00000392004 TKTL1P51854 596 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 CDH6P55285 790 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 ADIGQ0VDE8 80 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 LRRC26Q2I0M4 334 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 PHLDB3Q6NSJ2 640 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 LRRC55Q6ZSA7 311 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 MAP7D3Q8IWC1 876 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 C1orf127Q8N9H9 656 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 PAAF1Q9BRP4 392 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 CXorf56Q9H5V9 222 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 IFT122Q9HBG6 1241 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 STAP1Q9ULZ2 295 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 COL2A1P02458 1487 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-205ENST00000392004 ADAMTSL1Q8N6G6 1762 aa10.83□□□□□ -0.68
COL6A3-205ENST00000392004 ANO9A1A5B4 782 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 IQCF3P0C7M6 154 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 CYP11B1P15538 503 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 CALCOCO2Q13137 446 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 NID2Q14112 1375 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 PSMD5Q16401 504 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 ANO4Q32M45 955 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 HYIQ5T013 277 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 USP33Q8TEY7 942 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 ZNF606Q8WXB4 792 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 ING5Q8WYH8 240 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 WNT8BQ93098 351 aa10.82□□□□□ -0.68
COL6A3-205ENST00000392004 MRPL45Q9BRJ2 306 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms