RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 KHDC1LQ5JSQ8 128 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 KCTD16Q68DU8 428 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 APOA5Q6Q788 366 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 RHPN2Q8IUC4 686 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 SMYD1Q8NB12 490 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ART5Q96L15 291 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TRAPPC9Q96Q05 1148 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ARHGEF38Q9NXL2 777 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 VSX1Q9NZR4 365 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 EXOC1LA0A1B0GW35 172 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 AKAP10O43572 662 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PRKAR2AP13861 404 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 MSH3P20585 1137 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 GYS2P54840 703 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 EPS8Q12929 822 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 BNIP1Q12981 228 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 CBX3Q13185 183 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 STARD3Q14849 445 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PGS1Q32NB8 556 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ERFEQ4G0M1 354 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PAN2Q504Q3 1202 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PDXDC2PQ6P474 469 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 LRRC47Q8N1G4 583 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 MB21D1Q8N884 522 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ZSCAN1Q8NBB4 408 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 GIMAP8Q8ND71 665 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 CCDC51Q96ER9 411 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TMA16Q96EY4 203 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TSC22D3Q99576 134 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 FAM118BQ9BPY3 351 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 SLF1Q9BQI6 1058 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 DESI2Q9BSY9 194 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 THUMPD3Q9BV44 507 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 RACGAP1Q9H0H5 632 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 GPN1Q9HCN4 374 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 HERC5Q9UII4 1024 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TOP2AP11388 1531 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PDZK1P1A8MUH7 402 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 EVPLLA8MZ36 301 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PSMD9O00233 223 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 CACNB4O00305 520 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 IFRD1O00458 451 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PIK3R2O00459 728 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 IRS4O14654 1257 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TSPAN4O14817 238 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 LRATO95237 230 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 P4HBP07237 508 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ITGALP20701 1170 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 IGFALSP35858 605 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 SLC26A3P40879 764 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TMED10P49755 219 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 MDM2Q00987 491 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 KRR1Q13601 381 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ARMCX4Q5H9R4 360 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 FAM26FQ5R3K3 315 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PDZK1Q5T2W1 519 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TRIQKQ629K1 86 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 MTFR2Q6P444 385 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TMC5Q6UXY8 1006 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PLA2G4DQ86XP0 818 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ANKRD44Q8N8A2 993 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PPP1R16AQ96I34 528 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF668Q96K58 619 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 WDR41Q9HAD4 459 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PDS5BQ9NTI5 1447 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 POLA1P09884 1462 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 KAT6AQ92794 2004 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PI4KAP2A4QPH2 592 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 G3V2T6 193 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 H0Y3Z8 333 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TEX33O43247 280 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ABCB1P08183 1280 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PPP1R2P41236 205 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ERFP50548 548 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 RPS8P62241 208 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 TGM3Q08188 693 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PNOCQ13519 176 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 CYP4A22Q5TCH4 519 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 LLGL2Q6P1M3 1020 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 REXO1Q8N1G1 1221 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 MRPL50Q8N5N7 158 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PI4KAP1Q8N8J0 262 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 B3GALNT2Q8NCR0 500 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 NELFBQ8WX92 580 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 COL26A1Q96A83 441 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 AIFM2Q9BRQ8 373 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 AAASQ9NRG9 546 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 LNPEPQ9UIQ6 1025 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ANGEL1Q9UNK9 670 aaKnown RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 AXIN2Q9Y2T1 843 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 PPP2R2CQ9Y2T4 447 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-202ENST00000375405 KPNA7A9QM74 516 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 GYG2O15488 501 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 VAMP4O75379 141 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 KRT36O76013 467 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 MYL2P10916 166 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 LCP1P13796 627 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 UQCRBP14927 111 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 FAM98CQ17RN3 349 aaKnown RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms