RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 METTL5Q9NRN9 209 aaKnown RBP11.9□□□□□ -0.5
PTPRF-203ENST00000372407 DLGAP2Q9P1A6 1054 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 WHRNQ9P202 907 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 PHTF1Q9UMS5 762 aa11.9□□□□□ -0.5
PTPRF-203ENST00000372407 COL3A1P02461 1466 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-203ENST00000372407 ARHGEF9O43307 516 aa11.9□□□□□ -0.51
PTPRF-203ENST00000372407 SRP72O76094 671 aaKnown RBP11.9□□□□□ -0.51
PTPRF-203ENST00000372407 HSPA1AP0DMV8 641 aaKnown RBP11.9□□□□□ -0.51
PTPRF-203ENST00000372407 HSPA1BP0DMV9 641 aaKnown RBP11.9□□□□□ -0.51
PTPRF-203ENST00000372407 ACADSP16219 412 aa11.9□□□□□ -0.51
PTPRF-203ENST00000372407 ATICP31939 592 aa11.9□□□□□ -0.51
PTPRF-203ENST00000372407 COPAP53621 1224 aa11.9□□□□□ -0.51
PTPRF-203ENST00000372407 IRX1P78414 480 aaPredicted RBP11.9□□□□□ -0.51
PTPRF-203ENST00000372407 ZNF507Q8TCN5 953 aa11.9□□□□□ -0.51
PTPRF-203ENST00000372407 PACSIN1Q9BY11 444 aa11.9□□□□□ -0.51
PTPRF-203ENST00000372407 SLC38A7Q9NVC3 462 aa11.9□□□□□ -0.51
PTPRF-203ENST00000372407 GGA3Q9NZ52 723 aa11.9□□□□□ -0.51
PTPRF-203ENST00000372407 SLC39A10Q9ULF5 831 aa11.9□□□□□ -0.51
PTPRF-203ENST00000372407 COL14A1Q05707 1796 aaKnown RBP11.89□□□□□ -0.51
PTPRF-203ENST00000372407 A0A0A6YYK5 440 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-203ENST00000372407 AP5Z1O43299 807 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 CAND2O75155 1236 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 APOA4P06727 396 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 CYP11B1P15538 503 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 HLA-DPA1P20036 260 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 HERVK_113P62684 666 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 CCNJLQ8IV13 435 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 GALNT4Q8N4A0 578 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 AGBL3Q8NEM8 1001 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 SLC7A14Q8TBB6 771 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 EPS8L3Q8TE67 593 aaKnown RBP11.89□□□□□ -0.51
PTPRF-203ENST00000372407 UPF1Q92900 1129 aaKnown RBP eCLIP11.89□□□□□ -0.511e-7■■■■■ 44.5
PTPRF-203ENST00000372407 HEY2Q9UBP5 337 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 FAM32AQ9Y421 112 aaKnown RBP11.89□□□□□ -0.51
PTPRF-203ENST00000372407 SALL3Q9BXA9 1300 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 SGPL1O95470 568 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 STX5Q13190 355 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 PTK6Q13882 451 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 GIT2Q14161 759 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 ITIH4Q14624 930 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 EFCAB12Q6NXP0 572 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 IPMKQ8NFU5 416 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 ILKAPQ9H0C8 392 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-203ENST00000372407 CATSPERBQ9H7T0 1116 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 SYNDIG1LA6NDD5 238 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 SLC25A27O95847 323 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 KCNA4P22459 653 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 SREBF1P36956 1147 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 TRPC1P48995 793 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 RGS4P49798 205 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 NLRP11P59045 1033 aaKnown RBP11.89□□□□□ -0.51
PTPRF-203ENST00000372407 MCL1Q07820 350 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 KRT72Q14CN4 511 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 SV2CQ496J9 727 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 CYP4A22Q5TCH4 519 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 ANGEL2Q5VTE6 544 aaKnown RBP11.89□□□□□ -0.51
PTPRF-203ENST00000372407 EFL1Q7Z2Z2 1120 aaKnown RBP11.89□□□□□ -0.51
PTPRF-203ENST00000372407 CHST13Q8NET6 341 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 ATG4CQ96DT6 458 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 DTNBP1Q96EV8 351 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 SPATA17Q96L03 361 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 FBXO28Q9NVF7 368 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 ZNF229Q9UJW7 825 aa11.89□□□□□ -0.51
PTPRF-203ENST00000372407 ZC3H4Q9UPT8 1303 aaKnown RBP11.89□□□□□ -0.51
PTPRF-203ENST00000372407 TNPO2O14787 897 aaKnown RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 HNRNPRO43390 633 aaKnown RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 AKAP3O75969 853 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 TCN1P20061 433 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 EPHB2P29323 1055 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 RANBP1P43487 201 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 VCPP55072 806 aaKnown RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 OVGP1Q12889 678 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 TAAR1Q96RJ0 339 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 CBWD1Q9BRT8 395 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 ASCC2Q9H1I8 757 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 KIAA1257Q9ULG3 409 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 RPS6KL1Q9Y6S9 549 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 VEGFAP15692 232 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 GARTP22102 1010 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 MYBPC2Q14324 1141 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 DMC1Q14565 340 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 NR1H4Q96RI1 486 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 ELP3Q9H9T3 547 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 DAB1O75553 588 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 NQO1P15559 274 aaKnown RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 TARSP26639 723 aaKnown RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 FDFT1P37268 417 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 ATXN3P54252 364 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 PCSK7Q16549 785 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 FAM83EQ2M2I3 478 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 KIZQ2M2Z5 673 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 TFDP3Q5H9I0 405 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 ZNF571Q7Z3V5 609 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 FBXL16Q8N461 479 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 CAVIN3Q969G5 261 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 CDC42EP4Q9H3Q1 356 aaKnown RBP11.88□□□□□ -0.51
PTPRF-203ENST00000372407 ZC4H2Q9NQZ6 224 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 RIC8BQ9NVN3 520 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 GLRA3O75311 464 aa11.88□□□□□ -0.51
PTPRF-203ENST00000372407 CYP2C9P11712 490 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms