RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 IRX4P78413 519 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 MMRN1Q13201 1228 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 MORF4L2Q15014 288 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 PTPRN2Q92932 1015 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 EURLQ9NYK6 297 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 ARMCX1Q9P291 453 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 SMG5Q9UPR3 1016 aaKnown RBP12.74□□□□□ -0.37
CLIP3-201ENST00000360535 ENO4A6NNW6 628 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 ALOX15BO15296 676 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 CALB1P05937 261 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 CCNB1P14635 433 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 TBXAS1P24557 533 aaPredicted RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 RPL22P35268 128 aaKnown RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 C1orf228Q6PIY5 440 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 FLAD1Q8NFF5 587 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 GPRASP2Q96D09 838 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 CGRRF1Q99675 332 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 SLC5A4Q9NY91 659 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 MARCOQ9UEW3 520 aaPredicted RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 TBC1D12O60347 775 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 LPXNO60711 386 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 DKC1O60832 514 aaKnown RBP eCLIP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 ALADP13716 330 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 YARSP54577 528 aaKnown RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 NR1H3Q13133 447 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 MOGSQ13724 837 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 SCYL2Q6P3W7 929 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 ABHD15Q6UXT9 468 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 RIBC1Q8N443 379 aaPredicted RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 C10orf82Q8WW14 230 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 CPT1BQ92523 772 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 SLC13A1Q9BZW2 595 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 DENND2DQ9H6A0 471 aaPredicted RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 RABGEF1Q9UJ41 708 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 ACTL7BQ9Y614 415 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 TMEM63AO94886 807 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 SUPT20HL2P0C7V6 817 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 BGNP21810 368 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 PHBP35232 272 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 EIF3EP60228 445 aaKnown RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 ZNF699Q32M78 642 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 GNPTABQ3T906 1256 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 SUPT20HL1Q3ZLR7 823 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 DARS2Q6PI48 645 aaKnown RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 FAM83AQ86UY5 434 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 TRIM50Q86XT4 487 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 VPS52Q8N1B4 723 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 WDTC1Q8N5D0 677 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 ATP11CQ8NB49 1132 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 PRPF31Q8WWY3 499 aaKnown RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 SLC7A6OSQ96CW6 309 aaPredicted RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 NAF1Q96HR8 494 aaKnown RBP12.73□□□□□ -0.37
CLIP3-201ENST00000360535 WRNIP1Q96S55 665 aa12.73□□□□□ -0.37
CLIP3-201ENST00000360535 H7C0C1 242 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 ABHD2P08910 425 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 RBP3P10745 1247 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 SERPINB3P29508 390 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 ELK3P41970 407 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 ATP5OP48047 213 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 TMEM132BQ14DG7 1078 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 OASLQ15646 514 aaKnown RBP12.72□□□□□ -0.37
CLIP3-201ENST00000360535 RAB6CQ53S08 254 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 SLFN12LQ6IEE8 588 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 CAPRIN2Q6IMN6 1127 aaKnown RBP12.72□□□□□ -0.37
CLIP3-201ENST00000360535 TTC7BQ86TV6 843 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 IGDCC3Q8IVU1 814 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PDIK1LQ8N165 341 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 TMEM174Q8WUU8 243 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 MCUR1Q96AQ8 359 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 NLRP4Q96MN2 994 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 OSBPL1AQ9BXW6 950 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 RAB6CQ9H0N0 254 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 DEFB129Q9H1M3 183 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 MANSC1Q9H8J5 431 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 RNPEPL1Q9HAU8 725 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 HEY1Q9Y5J3 304 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 A0A0B4J269 797 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PEX11AO75192 247 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 OATP04181 439 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PYGBP11216 843 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 ACVR2BQ13705 512 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 RCN2Q14257 317 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 MUM1Q2TAK8 710 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PTPN20Q4JDL3 420 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 SH3PXD2AQ5TCZ1 1133 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 KIAA0319LQ8IZA0 1049 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 AGGF1Q8N302 714 aaeCLIP12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PPM1NQ8N819 430 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 RNF149Q8NC42 400 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 SPATA18Q8TC71 538 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 VCPIP1Q96JH7 1222 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 MECRQ9BV79 373 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PCDH9Q9HC56 1237 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PDLIM7Q9NR12 457 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 ARL8BQ9NVJ2 186 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 ZNRF3Q9ULT6 936 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 INO80B-WBP1J3KQ70 363 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 PRPF4O43172 522 aaKnown RBP eCLIP12.72□□□□□ -0.37
CLIP3-201ENST00000360535 TYROBPO43914 113 aa12.72□□□□□ -0.37
CLIP3-201ENST00000360535 FAAP100Q0VG06 881 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms