RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 TFR2Q9UP52 801 aa19.1■□□□□ 0.65
SHANK1-202ENST00000359082 RUVBL2Q9Y230 463 aaKnown RBP19.1■□□□□ 0.65
SHANK1-202ENST00000359082 RASSF9O75901 435 aa19.1■□□□□ 0.65
SHANK1-202ENST00000359082 CTCFP49711 727 aaPredicted RBP19.1■□□□□ 0.65
SHANK1-202ENST00000359082 PGS1Q32NB8 556 aa19.1■□□□□ 0.65
SHANK1-202ENST00000359082 ZNF70Q9UC06 446 aaPredicted RBP19.1■□□□□ 0.65
SHANK1-202ENST00000359082 IQCA1LA6NCM1 817 aa19.1■□□□□ 0.65
SHANK1-202ENST00000359082 NR3C2P08235 984 aa19.1■□□□□ 0.65
SHANK1-202ENST00000359082 ERAP2Q6P179 960 aa19.1■□□□□ 0.65
SHANK1-202ENST00000359082 ATG9AQ7Z3C6 839 aa19.1■□□□□ 0.65
SHANK1-202ENST00000359082 FGD2Q7Z6J4 655 aa19.1■□□□□ 0.65
SHANK1-202ENST00000359082 KIRREL3Q8IZU9 778 aa19.1■□□□□ 0.65
SHANK1-202ENST00000359082 C1orf131Q8NDD1 294 aaKnown RBP19.1■□□□□ 0.65
SHANK1-202ENST00000359082 BLOC1S5Q8TDH9 187 aa19.1■□□□□ 0.65
SHANK1-202ENST00000359082 ALFQ53S48 1182 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 LUZP2Q86TE4 346 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 MXRA8Q9BRK3 442 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 VIPAS39Q9H9C1 493 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 KCND2Q9NZV8 630 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 TRMT6Q9UJA5 497 aaKnown RBP19.09■□□□□ 0.65
SHANK1-202ENST00000359082 GTF2A1LQ9UNN4 478 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 TRPC5OSA6NMA1 111 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 PMPCBO75439 489 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 SPAG6O75602 509 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 OVGP1Q12889 678 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 CDH18Q13634 790 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 VPS37AQ8NEZ2 397 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 TADA1Q96BN2 335 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 PARK7Q99497 189 aaKnown RBP19.09■□□□□ 0.65
SHANK1-202ENST00000359082 NMRK2Q9NPI5 230 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 BATF3Q9NR55 127 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 A0A1B0GW55 424 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 SKAP2O75563 359 aaPredicted RBP19.09■□□□□ 0.65
SHANK1-202ENST00000359082 ALBP02768 609 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 DUX4L2P0CJ85 424 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 DUX4L3P0CJ86 424 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 DUX4L4P0CJ87 422 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 DUX4L5P0CJ88 424 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 DUX4L6P0CJ89 424 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 DUX4L7P0CJ90 424 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 CCND1P24385 295 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 CCDC15Q0P6D6 951 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 NAPEPLDQ6IQ20 393 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 TRAPPC11Q7Z392 1133 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 OOSP2Q86WS3 158 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 MDM1Q8TC05 714 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 THUMPD3Q9BV44 507 aaKnown RBP19.09■□□□□ 0.65
SHANK1-202ENST00000359082 DUX4Q9UBX2 424 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 MAGEB2O15479 319 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 SOAT2O75908 522 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 CLEC16AQ2KHT3 1053 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 UGT3A1Q6NUS8 523 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 ZFYVE28Q9HCC9 887 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 EIF3LQ9Y262 564 aaKnown RBP19.09■□□□□ 0.65
SHANK1-202ENST00000359082 EIF3DO15371 548 aaKnown RBP eCLIP19.09■□□□□ 0.65
SHANK1-202ENST00000359082 TOMM70O94826 608 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 CYP2C9P11712 490 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 PRIM2P49643 509 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 TTC33Q6PID6 262 aaPredicted RBP19.09■□□□□ 0.65
SHANK1-202ENST00000359082 RERGLQ9H628 205 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 CAAP1Q9H8G2 361 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 ZNF609O15014 1411 aa19.09■□□□□ 0.65
SHANK1-202ENST00000359082 KDM6AO15550 1401 aaPredicted RBP19.09■□□□□ 0.65
SHANK1-202ENST00000359082 LRG1P02750 347 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 TMEM253P0C7T8 217 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 FAM200BP0CF97 657 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 SERPINB3P29508 390 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 LSP1P33241 339 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 SEZ6Q53EL9 994 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 ARHGAP15Q53QZ3 475 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 TRIM65Q6PJ69 517 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 GLB1LQ6UWU2 654 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 CENPLQ8N0S6 344 aaPredicted RBP19.08■□□□□ 0.65
SHANK1-202ENST00000359082 ROPN1BQ9BZX4 212 aaPredicted RBP19.08■□□□□ 0.65
SHANK1-202ENST00000359082 ROPN1Q9HAT0 212 aaPredicted RBP19.08■□□□□ 0.65
SHANK1-202ENST00000359082 DMAP1Q9NPF5 467 aaPredicted RBP19.08■□□□□ 0.65
SHANK1-202ENST00000359082 PCSK1P29120 753 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 ANKRD49Q8WVL7 239 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 PPCSQ9HAB8 311 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 DPP3Q9NY33 737 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 APPL1Q9UKG1 709 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 C19orf81C9J6K1 198 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 DLGAP3O95886 979 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 USP38Q8NB14 1042 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 IGDCC4Q8TDY8 1250 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 LPAR1Q92633 364 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 SCUBE2Q9NQ36 999 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 PCDHB2Q9Y5E7 798 aa19.08■□□□□ 0.65
SHANK1-202ENST00000359082 KRT75O95678 551 aa19.08■□□□□ 0.64
SHANK1-202ENST00000359082 ATP6V1B1P15313 513 aa19.08■□□□□ 0.64
SHANK1-202ENST00000359082 DGKDQ16760 1214 aa19.08■□□□□ 0.64
SHANK1-202ENST00000359082 WDCPQ9H6R7 721 aa19.08■□□□□ 0.64
SHANK1-202ENST00000359082 SLC30A9Q6PML9 568 aa19.08■□□□□ 0.64
SHANK1-202ENST00000359082 RAD9BQ6WBX8 426 aa19.08■□□□□ 0.64
SHANK1-202ENST00000359082 NIF3L1Q9GZT8 377 aa19.08■□□□□ 0.64
SHANK1-202ENST00000359082 ZNRF3Q9ULT6 936 aa19.08■□□□□ 0.64
SHANK1-202ENST00000359082 M0QYT0 321 aa19.07■□□□□ 0.64
SHANK1-202ENST00000359082 ANGEL2Q5VTE6 544 aaKnown RBP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 SLC44A2Q8IWA5 706 aaPredicted RBP19.07■□□□□ 0.64
SHANK1-202ENST00000359082 MICU2Q8IYU8 434 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms