RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 BRD8Q9H0E9 1235 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 F8W8V4 182 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 AKAP3O75969 853 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 MYBL2P10244 700 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 CYP4A22Q5TCH4 519 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 CCDC103Q8IW40 242 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 RNPEPL1Q9HAU8 725 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 KIF20BQ96Q89 1820 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 SPATA31A1Q5TZJ5 1347 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 FCHO1O14526 889 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 AP1G2O75843 785 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 PRKCBP05771 671 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 TWF2Q6IBS0 349 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 TAS2R42Q7RTR8 314 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 P3H2Q8IVL5 708 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 KRT35Q92764 455 aa20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 JPH1Q9HDC5 661 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-202ENST00000356786 RRM1P23921 792 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 PPIDQ08752 370 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 MEA1Q16626 185 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 KIAA1841Q6NSI8 718 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 GJD4Q96KN9 370 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 SNX9Q9Y5X1 595 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 XKR3Q5GH77 459 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 TJAP1Q5JTD0 557 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 MSL3Q8N5Y2 521 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 SLC5A5Q92911 643 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 RMDN1Q96DB5 314 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 RUSC1Q9BVN2 902 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 AFF4Q9UHB7 1163 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 ZNF189O75820 626 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 USP1O94782 785 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 CYP11B1P15538 503 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 PSMA4P25789 261 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 SPP2Q13103 211 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 PCNX4Q63HM2 1172 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 DEFB107AQ8IZN7 70 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 TMEM121Q9BTD3 319 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 MYLK2Q9H1R3 596 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 TM9SF1O15321 606 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 FKBP9O95302 570 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 DLGAP3O95886 979 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 SERPINB8P50452 374 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 CCNG2Q16589 344 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 FKBP9P1Q75LS8 142 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 CCDC60Q8IWA6 550 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 PLEKHA5Q9HAU0 1116 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 BTBD7Q9P203 1132 aa20.3■□□□□ 0.84
CCDC88B-202ENST00000356786 MAP3K6O95382 1288 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 SULT1E1P49888 294 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 SLC26A11Q86WA9 606 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 ZNF34Q8IZ26 560 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 FBXO40Q9UH90 709 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 C2CD2Q9Y426 696 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 SYNDIG1LA6NDD5 238 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 TRPC5OSA6NMA1 111 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 CRELD2Q6UXH1 353 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 LPCAT2Q7L5N7 544 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 SLC20A1Q8WUM9 679 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 LRRC10BA6NIK2 292 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 E9PBE3 544 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 SNX3O60493 162 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 KLHL41O60662 606 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 KCNK10P57789 538 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 C16orf72Q14CZ0 275 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 ZBTB49Q6ZSB9 765 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 ASAP3Q8TDY4 903 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 SEPT8Q92599 483 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 SH3GL2Q99962 352 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 RPS6KL1Q9Y6S9 549 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 ADRA2BP18089 450 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 KCNT1Q5JUK3 1230 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 C16orf86Q6ZW13 317 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 KIAA0895Q8NCT3 520 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 TRAPPC9Q96Q05 1148 aa20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 DUSP9Q99956 384 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-202ENST00000356786 HNRNPRO43390 633 aaKnown RBP20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 MED24O75448 989 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 MYO1DO94832 1006 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 FAM58BPP0C7Q3 252 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 ZNF23P17027 643 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 PTGER2P43116 358 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 ITGB3BPQ13352 177 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 STILQ15468 1287 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 ANO4Q32M45 955 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 SPDYAQ5MJ70 313 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 SHCBP1Q8NEM2 672 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 TNIP3Q96KP6 325 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 DAGLAQ9Y4D2 1042 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 OPLAHO14841 1288 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 PDK1Q15118 436 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 TFDP3Q5H9I0 405 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 NR1H4Q96RI1 486 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 ZNF184Q99676 751 aaPredicted RBP20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 HOXC10Q9NYD6 342 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 GPD1P21695 349 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 C4orf22Q6V702 233 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 RRM2BQ7LG56 351 aa20.28■□□□□ 0.84
CCDC88B-202ENST00000356786 LZICQ8WZA0 190 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms