RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CD300LGQ6UXG3 332 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 SCUBE3Q8IX30 993 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 LNX1Q8TBB1 728 aaPredicted RBP9.77□□□□□ -0.85
USP4-202ENST00000351842 WHAMMQ8TF30 809 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 HERVK_113Q902F9 699 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 MYLPFQ96A32 169 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 CYP4F11Q9HBI6 524 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 CRTAC1Q9NQ79 661 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 COLQQ9Y215 455 aaPredicted RBP9.77□□□□□ -0.85
USP4-202ENST00000351842 DDX3XO00571 662 aaKnown RBP eCLIP9.77□□□□□ -0.852e-8■■■■□ 21
USP4-202ENST00000351842 PRRG1O14668 218 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 EFCAB14O75071 495 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 JAM2P57087 298 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 CDO1Q16878 200 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 ARHGAP29Q52LW3 1261 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 HGSNATQ68CP4 663 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 SPATA2LQ8IUW3 424 aaPredicted RBP9.77□□□□□ -0.85
USP4-202ENST00000351842 FEZF2Q8TBJ5 459 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 DNAJC7Q99615 494 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 FBXL5Q9UKA1 691 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 USTQ9Y2C2 406 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 SDK1Q7Z5N4 2213 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 MICAL2O94851 1124 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 NSFP46459 744 aaKnown RBP9.76□□□□□ -0.85
USP4-202ENST00000351842 CCDC85BQ15834 202 aaPredicted RBP9.76□□□□□ -0.85
USP4-202ENST00000351842 USP41Q3LFD5 358 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 MTERF4Q7Z6M4 381 aaKnown RBP9.76□□□□□ -0.85
USP4-202ENST00000351842 KCNN1Q92952 543 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 SLC9A7Q96T83 725 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 MSRAQ9UJ68 235 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 CDH22Q9UJ99 828 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 CEP83Q9Y592 693 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 ZNF263O14978 683 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 LAG3P18627 525 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 CYP3A5P20815 502 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 DNAJB1P25685 340 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 KLRC2P26717 231 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 CYLC1P35663 651 aaPredicted RBP9.76□□□□□ -0.85
USP4-202ENST00000351842 NDUFV1P49821 464 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 FMO1Q01740 532 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 MTMR3Q13615 1198 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 SKIV2LQ15477 1246 aaKnown RBP9.76□□□□□ -0.85
USP4-202ENST00000351842 EMC1Q8N766 993 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 MYRIPQ8NFW9 859 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 SCAMP5Q8TAC9 235 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 CLEC4CQ8WTT0 213 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 ZNF653Q96CK0 615 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 LRCH3Q96II8 777 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 SUSD3Q96L08 255 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 TRIM7Q9C029 511 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 PRDM12Q9H4Q4 367 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 AAASQ9NRG9 546 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 TMEM30AQ9NV96 361 aa9.76□□□□□ -0.85
USP4-202ENST00000351842 RCCD1A6NED2 376 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 YWHAEP62258 255 aaKnown RBP9.75□□□□□ -0.85
USP4-202ENST00000351842 TAF5Q15542 800 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 CLUL1Q15846 466 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 OR6B2Q6IFH4 312 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 ZNF280DQ6N043 979 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 RNF19BQ6ZMZ0 732 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 TMTC1Q8IUR5 882 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 TDHQ8IZJ6 230 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 CRIPAKQ8N1N5 446 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 FBXO22Q8NEZ5 403 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 ADAM32Q8TC27 787 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 KIAA1524Q8TCG1 905 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 SECISBP2LQ93073 1101 aaKnown RBP9.75□□□□□ -0.85
USP4-202ENST00000351842 TNIP3Q96KP6 325 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 LACRTQ9GZZ8 138 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 THAP2Q9H0W7 228 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 MRPL17Q9NRX2 175 aaKnown RBP9.75□□□□□ -0.85
USP4-202ENST00000351842 TANC1Q9C0D5 1861 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 CCDC172P0C7W6 258 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 CHRNB2P17787 502 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 PCSK1P29120 753 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 GPM6BQ13491 265 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 SMC1AQ14683 1233 aaKnown RBP9.75□□□□□ -0.85
USP4-202ENST00000351842 TTC30AQ86WT1 665 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 PIWIL1Q96J94 861 aaKnown RBP9.75□□□□□ -0.85
USP4-202ENST00000351842 PANX2Q96RD6 677 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 GDF15Q99988 308 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 RTP3Q9BQQ7 232 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 BCO2Q9BYV7 579 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 OSGEPQ9NPF4 335 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 ADAM22Q9P0K1 906 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 CTTNBP2NLQ9P2B4 639 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 F5P12259 2224 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 ELF1P32519 619 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 GLUD2P49448 558 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 PMF1Q6P1K2 205 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 Q7L0L9 218 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 TMEM139Q8IV31 216 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 FUKQ8N0W3 1084 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 SLC39A11Q8N1S5 342 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 C12orf76Q8N812 135 aaPredicted RBP9.75□□□□□ -0.85
USP4-202ENST00000351842 EDEM1Q92611 657 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 TAF4BQ92750 862 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 ZNF689Q96CS4 500 aaPredicted RBP9.75□□□□□ -0.85
USP4-202ENST00000351842 CRISPLD1Q9H336 500 aa9.75□□□□□ -0.85
USP4-202ENST00000351842 PACSIN2Q9UNF0 486 aaPredicted RBP9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms