RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ADAM32Q8TC27 787 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 TFAP2BQ92481 460 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 CCT6BQ92526 530 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 KIAA1586Q9HCI6 787 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 DONSONQ9NYP3 566 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 ZNF536O15090 1300 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 A6NJR5 290 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 BTNL10A8MVZ5 291 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 H3BRJ5 948 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 NEMP1O14524 444 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 HAUS5O94927 633 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 MAPTP10636 758 aaKnown RBP12.51□□□□□ -0.41
USP1-201ENST00000339950 ANXA13P27216 316 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 SERPINB6P35237 376 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 LMNB2Q03252 620 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 KIZQ2M2Z5 673 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 HSDL1Q3SXM5 330 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 PAN2Q504Q3 1202 aaKnown RBP12.51□□□□□ -0.41
USP1-201ENST00000339950 RAB6CQ53S08 254 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 TMEM63BQ5T3F8 832 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 ANKS1BQ7Z6G8 1248 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 PCGF5Q86SE9 256 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 SDCCAG8Q86SQ7 713 aaPredicted RBP12.51□□□□□ -0.41
USP1-201ENST00000339950 SERPINB12Q96P63 405 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 TRIM55Q9BYV6 548 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 RAB6CQ9H0N0 254 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 UBP1Q9NZI7 540 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 PCYOX1Q9UHG3 505 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 CSPG5O95196 566 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 MYCP01106 439 aaPredicted RBP12.5□□□□□ -0.41
USP1-201ENST00000339950 CALB1P05937 261 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 SUPT20HL2P0C7V6 817 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 ZNF286BP0CG31 522 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 AP1B1Q10567 949 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 SUPT20HL1Q3ZLR7 823 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 USP33Q8TEY7 942 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 LPAR1Q92633 364 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 KIAA1683Q9H0B3 1180 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 A0A087WZ62 844 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 BAG6P46379 1132 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 STYK1Q6J9G0 422 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 DEPDC1BQ8WUY9 529 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 USP6NLQ92738 828 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 ABTB1Q969K4 478 aaPredicted RBP12.5□□□□□ -0.41
USP1-201ENST00000339950 CDHR1Q96JP9 859 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 FDXACB1Q9BRP7 624 aaPredicted RBP12.5□□□□□ -0.41
USP1-201ENST00000339950 THTPAQ9BU02 230 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 TSSK1BQ9BXA7 367 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 B3GNT5Q9BYG0 378 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 NIF3L1Q9GZT8 377 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 TXLNGQ9NUQ3 528 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 ECM29Q5VYK3 1845 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 MEI4A8MW99 385 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 DGKIO75912 1065 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 CYP1A2P05177 515 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 GMPRP36959 345 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 NCALDP61601 193 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 NOMO3P69849 1222 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 ROR1Q01973 937 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 CACNB2Q08289 660 aaPredicted RBP12.5□□□□□ -0.41
USP1-201ENST00000339950 FAAP100Q0VG06 881 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 ATF7IP2Q5U623 682 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 POLNQ7Z5Q5 900 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 YTHDF3Q7Z739 585 aaKnown RBP12.5□□□□□ -0.41
USP1-201ENST00000339950 FAM131BQ86XD5 332 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 CCDC125Q86Z20 511 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 RCOR2Q8IZ40 523 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 ATP11CQ8NB49 1132 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 FAM81BQ96LP2 452 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 PGLYRP2Q96PD5 576 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 KDM4CQ9H3R0 1056 aa12.5□□□□□ -0.41
USP1-201ENST00000339950 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.5□□□□□ -0.41
USP1-201ENST00000339950 ZC3H7BQ9UGR2 993 aaKnown RBP12.5□□□□□ -0.41
USP1-201ENST00000339950 TCRBV7S3A2A0A539 114 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 TOP3BO95985 862 aaKnown RBP12.49□□□□□ -0.41
USP1-201ENST00000339950 SERPINB3P29508 390 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 ATXN2LQ8WWM7 1075 aaKnown RBP12.49□□□□□ -0.41
USP1-201ENST00000339950 RAB3IPQ96QF0 476 aaPredicted RBP12.49□□□□□ -0.41
USP1-201ENST00000339950 IFT122Q9HBG6 1241 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 HOXC10Q9NYD6 342 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 MYO18AQ92614 2054 aaKnown RBP12.49□□□□□ -0.41
USP1-201ENST00000339950 KBTBD13C9JR72 458 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 RASSF9O75901 435 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 UBTFL6P0CB48 400 aaPredicted RBP12.49□□□□□ -0.41
USP1-201ENST00000339950 CAPSQ13938 189 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 R3HDM1Q15032 1099 aaKnown RBP12.49□□□□□ -0.41
USP1-201ENST00000339950 KBTBD12Q3ZCT8 623 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 ZACNQ401N2 412 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 ZC3H12AQ5D1E8 599 aaKnown RBP12.49□□□□□ -0.41
USP1-201ENST00000339950 VSTM1Q6UX27 236 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 ECHDC2Q86YB7 292 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 NUDCD3Q8IVD9 361 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 NDUFAF2Q8N183 169 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 MCUQ8NE86 351 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 CLMNQ96JQ2 1002 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 SCYL1Q96KG9 808 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 SIK2Q9H0K1 926 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 PDGFCQ9NRA1 345 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 WHRNQ9P202 907 aa12.49□□□□□ -0.41
USP1-201ENST00000339950 SLC17A6Q9P2U8 582 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms