RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 BMP3P12645 472 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 EIF2AK2P19525 551 aaKnown RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 RNF19BQ6ZMZ0 732 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 ATPAF2Q8N5M1 289 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 EPB41L4AQ9HCS5 686 aaPredicted RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 PLOD3O60568 738 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 OR6B1O95007 311 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 SPRP35270 261 aaPredicted RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 ZRANB3Q5FWF4 1079 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 LIN54Q6MZP7 749 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 IZUMO2Q6UXV1 221 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 SUGP1Q8IWZ8 645 aaKnown RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 NUAK2Q9H093 628 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 FOXP2O15409 715 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 KPNA6O60684 536 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 WEE2P0C1S8 567 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 PAICSP22234 425 aaKnown RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 SERPINB9P50453 376 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 SYDE2Q5VT97 1194 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 RESP18Q5W5W9 173 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 SPATA18Q8TC71 538 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 USP33Q8TEY7 942 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 RCOR1Q9UKL0 485 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 HOXA7P31268 230 aaPredicted RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 IREB2P48200 963 aaKnown RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 PSMD4P55036 377 aaKnown RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 EFR3AQ14156 821 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 CACHD1Q5VU97 1274 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 ARL6IP4Q66PJ3 421 aaKnown RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 UNC13DQ70J99 1090 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 PJA1Q8NG27 643 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 GPR63Q9BZJ6 419 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 EFCAB1Q9HAE3 211 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 TRPC5OSA6NMA1 111 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 OVGP1Q12889 678 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 SUPT20HL1Q3ZLR7 823 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 MIIPQ5JXC2 388 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 KCTD10Q9H3F6 313 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 KIAA1586Q9HCI6 787 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 MAP3K20Q9NYL2 800 aaKnown RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 FAM25EA8MYX2 175 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 HSD3B2P26439 372 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 CDK17Q00537 523 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 DGKDQ16760 1214 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 DGUOKQ16854 277 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 FAM83EQ2M2I3 478 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 TMEM63BQ5T3F8 832 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 SLC9A6Q92581 669 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 SLITRK2Q9H156 845 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 SYNPO2Q9UMS6 1093 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 FAM135BQ49AJ0 1406 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 PIK3CDO00329 1044 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 PHGDHO43175 533 aaKnown RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 GDF11O95390 407 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 IRAK1P51617 712 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 EIF2S3LQ2VIR3 472 aaKnown RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 CLVS1Q8IUQ0 354 aaPredicted RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 EID3Q8N140 333 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 CCDC115Q96NT0 180 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 KBTBD13C9JR72 458 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 NR5A2O00482 541 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 SNRPAP09012 282 aaKnown RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 RALAP11233 206 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 PAX7P23759 505 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 MYBPC2Q14324 1141 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 TMC4Q7Z404 712 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 SLC25A41Q8N5S1 370 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 SMARCAL1Q9NZC9 954 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 SLC39A10Q9ULF5 831 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 KDM5AP29375 1690 aaKnown RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 TRPM2O94759 1503 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 SPTLC1O15269 473 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 CYP7B1O75881 506 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 ANXA11P50995 505 aaKnown RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 CAMK1Q14012 370 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 NKX1-1Q15270 411 aaPredicted RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 CROCCP3Q8IVE0 287 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 B3GALNT2Q8NCR0 500 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 DGCR6LQ9BY27 220 aa13.3□□□□□ -0.28
USP47-202ENST00000339865 CDK13Q14004 1512 aaKnown RBP13.3□□□□□ -0.28
USP47-202ENST00000339865 PFASO15067 1338 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 PSMD3O43242 534 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 PHF2O75151 1096 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 SCTRP47872 440 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 AP3B2Q13367 1082 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 SAMD3Q8N6K7 520 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 ZNF333Q96JL9 665 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 ZNF668Q96K58 619 aaPredicted RBP13.29□□□□□ -0.28
USP47-202ENST00000339865 CCDC59Q9P031 241 aaKnown RBP13.29□□□□□ -0.28
USP47-202ENST00000339865 RNF112Q9ULX5 631 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 EIF3LQ9Y262 564 aaKnown RBP13.29□□□□□ -0.28
USP47-202ENST00000339865 H3BN98 237 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 RAD17O75943 681 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 ATF4P18848 351 aaPredicted RBP13.29□□□□□ -0.28
USP47-202ENST00000339865 C2CD6Q53TS8 623 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 RFFLQ8WZ73 363 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 COPG2Q9UBF2 871 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 ASAP1Q9ULH1 1129 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 ALDH1A1P00352 501 aa13.29□□□□□ -0.28
USP47-202ENST00000339865 NPEPPSP55786 919 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms