RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 GNA15P30679 374 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 ARID5AQ03989 594 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 HYAL1Q12794 435 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 DUSP4Q13115 394 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 CFAP221Q4G0U5 840 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 SGO2Q562F6 1265 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 PPP1R26Q5T8A7 1209 aaPredicted RBP23.55■■□□□ 1.36
SDC3-202ENST00000339394 PAQR9Q6ZVX9 377 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 SPATA2LQ8IUW3 424 aaPredicted RBP23.55■■□□□ 1.36
SDC3-202ENST00000339394 C2orf15Q8WU43 125 aaKnown RBP23.55■■□□□ 1.36
SDC3-202ENST00000339394 CRISPLD1Q9H336 500 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 IGFLR1Q9H665 355 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 MTMR10Q9NXD2 777 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 PCDHB5Q9Y5E4 795 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 HCFC2Q9Y5Z7 792 aa23.55■■□□□ 1.36
SDC3-202ENST00000339394 CLDN5O00501 218 aa23.54■■□□□ 1.36
SDC3-202ENST00000339394 C1RP00736 705 aa23.54■■□□□ 1.36
SDC3-202ENST00000339394 BPIFB4P59827 614 aa23.54■■□□□ 1.36
SDC3-202ENST00000339394 ARHGAP17Q68EM7 881 aa23.54■■□□□ 1.36
SDC3-202ENST00000339394 DRC7Q8IY82 874 aa23.54■■□□□ 1.36
SDC3-202ENST00000339394 SPPL2BQ8TCT7 592 aa23.54■■□□□ 1.36
SDC3-202ENST00000339394 SLC22A17Q8WUG5 538 aa23.54■■□□□ 1.36
SDC3-202ENST00000339394 FUBP3Q96I24 572 aaKnown RBP eCLIP23.54■■□□□ 1.36
SDC3-202ENST00000339394 HNRNPABQ99729 332 aaKnown RBP23.54■■□□□ 1.36
SDC3-202ENST00000339394 RHOBTB2Q9BYZ6 727 aa23.54■■□□□ 1.36
SDC3-202ENST00000339394 SLC27A5Q9Y2P5 690 aa23.54■■□□□ 1.36
SDC3-202ENST00000339394 SEC24AO95486 1093 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 TPM1P09493 284 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 CYP11B1P15538 503 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 EPCAMP16422 314 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 BDNFP23560 247 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 CYP2F1P24903 491 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 BRD2P25440 801 aaKnown RBP23.53■■□□□ 1.36
SDC3-202ENST00000339394 KRT9P35527 623 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.53■■□□□ 1.36
SDC3-202ENST00000339394 TTC9BQ8N6N2 239 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 ZNF606Q8WXB4 792 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 MED10Q9BTT4 135 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 ZNF518BQ9C0D4 1074 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 CYP4F11Q9HBI6 524 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 ABCB6Q9NP58 842 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 AIPL1Q9NZN9 384 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 FBXW11Q9UKB1 542 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 MAFFQ9ULX9 164 aa23.53■■□□□ 1.36
SDC3-202ENST00000339394 O00370 1275 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 ADORA2BP29275 332 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 ELF1P32519 619 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 RBM10P98175 930 aaKnown RBP23.52■■□□□ 1.36
SDC3-202ENST00000339394 KCNC3Q14003 757 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 SFMBT2Q5VUG0 894 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 E4F1Q66K89 784 aaPredicted RBP23.52■■□□□ 1.36
SDC3-202ENST00000339394 LLGL2Q6P1M3 1020 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 IRF2BP2Q7Z5L9 587 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 KREMEN2Q8NCW0 462 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 NUCKS1Q9H1E3 243 aaKnown RBP23.52■■□□□ 1.36
SDC3-202ENST00000339394 TSPAN16Q9UKR8 245 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 THAP12O43422 761 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 FERP16591 822 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 ADKP55263 362 aaKnown RBP23.52■■□□□ 1.36
SDC3-202ENST00000339394 GOLGA8FQ08AF8 430 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 GOLGA8DPQ0D2H9 430 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 CNGA2Q16280 664 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 FAM35AQ86V20 835 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 FMNL3Q8IVF7 1028 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 TCEAL8Q8IYN2 117 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 VN1R2Q8NFZ6 395 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 EPS8L1Q8TE68 723 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 HSFX1Q9UBD0 423 aa23.52■■□□□ 1.36
SDC3-202ENST00000339394 CCDC172P0C7W6 258 aa23.51■■□□□ 1.35
SDC3-202ENST00000339394 PDE6CP51160 858 aa23.51■■□□□ 1.35
SDC3-202ENST00000339394 STILQ15468 1287 aa23.51■■□□□ 1.35
SDC3-202ENST00000339394 MGAT5BQ3V5L5 792 aa23.51■■□□□ 1.35
SDC3-202ENST00000339394 LCLAT1Q6UWP7 414 aa23.51■■□□□ 1.35
SDC3-202ENST00000339394 NOP9Q86U38 636 aaKnown RBP23.51■■□□□ 1.35
SDC3-202ENST00000339394 MICALL1Q8N3F8 863 aa23.51■■□□□ 1.35
SDC3-202ENST00000339394 SPC24Q8NBT2 197 aa23.51■■□□□ 1.35
SDC3-202ENST00000339394 SYN2Q92777 582 aaPredicted RBP23.51■■□□□ 1.35
SDC3-202ENST00000339394 SEPT5Q99719 369 aaPredicted RBP23.51■■□□□ 1.35
SDC3-202ENST00000339394 PLEKHA4Q9H4M7 779 aa23.51■■□□□ 1.35
SDC3-202ENST00000339394 MAN1C1Q9NR34 630 aa23.51■■□□□ 1.35
SDC3-202ENST00000339394 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.51■■□□□ 1.35
SDC3-202ENST00000339394 PRRC2BQ5JSZ5 2229 aaKnown RBP23.51■■□□□ 1.35
SDC3-202ENST00000339394 AKR1B15C9JRZ8 316 aaPredicted RBP23.5■■□□□ 1.35
SDC3-202ENST00000339394 PRRG1O14668 218 aa23.5■■□□□ 1.35
SDC3-202ENST00000339394 MFAP3LO75121 409 aa23.5■■□□□ 1.35
SDC3-202ENST00000339394 HAPLN1P10915 354 aaPredicted RBP23.5■■□□□ 1.35
SDC3-202ENST00000339394 FOSL2P15408 326 aa23.5■■□□□ 1.35
SDC3-202ENST00000339394 TUFMP49411 452 aaKnown RBP23.5■■□□□ 1.35
SDC3-202ENST00000339394 CACNA2D1P54289 1103 aa23.5■■□□□ 1.35
SDC3-202ENST00000339394 VSTM1Q6UX27 236 aa23.5■■□□□ 1.35
SDC3-202ENST00000339394 EFHBQ8N7U6 833 aa23.5■■□□□ 1.35
SDC3-202ENST00000339394 OR8K1Q8NGG5 319 aa23.5■■□□□ 1.35
SDC3-202ENST00000339394 SLC7A14Q8TBB6 771 aa23.5■■□□□ 1.35
SDC3-202ENST00000339394 DDX1Q92499 740 aaKnown RBP23.5■■□□□ 1.35
SDC3-202ENST00000339394 SMARCD1Q96GM5 515 aa23.5■■□□□ 1.35
SDC3-202ENST00000339394 TMEM30AQ9NV96 361 aa23.5■■□□□ 1.35
SDC3-202ENST00000339394 MED7O43513 233 aa23.49■■□□□ 1.35
SDC3-202ENST00000339394 AP1G2O75843 785 aa23.49■■□□□ 1.35
SDC3-202ENST00000339394 SOAT2O75908 522 aa23.49■■□□□ 1.35
SDC3-202ENST00000339394 CFHP08603 1231 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms