RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 KLHL41O60662 606 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 FBXO21O94952 628 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 SYF2O95926 243 aaKnown RBP10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 PYGMP11217 842 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 CYP11B2P19099 503 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 TMED10P49755 219 aaKnown RBP10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 STAT5BP51692 787 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 UNC45BQ8IWX7 931 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 ASB2Q96Q27 587 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 WFS1O76024 890 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 COG2Q14746 738 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 KRT72Q14CN4 511 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 LRRC43Q8N309 656 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 TBC1D19Q8N5T2 526 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 APOL6Q9BWW8 343 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 ICAM1P05362 532 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 POU5F1BQ06416 359 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 RBBP7Q16576 425 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 CDR2LQ86X02 465 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 DDHD1Q8NEL9 900 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 NUDT17P0C025 328 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 MYBP10242 640 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 CDK16Q00536 496 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 SLC12A1Q13621 1099 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 SLC44A4Q53GD3 710 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 LRRC34Q8IZ02 419 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 CDC42EP4Q9H3Q1 356 aaKnown RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 KDM3BQ7LBC6 1761 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 MRPL28Q13084 256 aaKnown RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 MTFR1Q15390 333 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 TWF2Q6IBS0 349 aaKnown RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF184Q99676 751 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 BEGAINQ9BUH8 593 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 PAPOLBQ9NRJ5 636 aaKnown RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 KCNK4Q9NYG8 393 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 NCANO14594 1321 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 NTSR2O95665 410 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 NDUFB10O96000 172 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 SEC24CP53992 1094 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 GRB10Q13322 594 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 TMEM119Q4V9L6 283 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 TTC33Q6PID6 262 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 CREG2Q8IUH2 290 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 AURKCQ9UQB9 309 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 JCADQ9P266 1359 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 SIGLEC1Q9BZZ2 1709 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 ZBBXA8MT70 800 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 M0R3G1 203 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 HLA-DRAP01903 254 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 MPOP05164 745 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 RBP1P09455 135 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 SLC9A1P19634 815 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 MAPK1P28482 360 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 SOX6P35712 828 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 KCNK10P57789 538 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 CCDC15Q0P6D6 951 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 IRGCQ6NXR0 463 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 FOPNLQ96NB1 174 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 PRPF18Q99633 342 aaKnown RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 ALBP02768 609 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 TRIM60Q495X7 471 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 SEL1L3Q68CR1 1132 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 ELMOD1Q8N336 334 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 ZCCHC9Q8N567 271 aaKnown RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 OR6P1Q8NGX9 317 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 ATP8B4Q8TF62 1192 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 CPA5Q8WXQ8 436 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 KIF12Q96FN5 646 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 MAF1Q9H063 256 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 NCKIPSDQ9NZQ3 722 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 CHI3L2Q15782 390 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 GSTA3Q16772 222 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 RNF219Q5W0B1 726 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 BNC2Q6ZN30 1099 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 RYBPQ8N488 228 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 APOPT1Q96IL0 206 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF229Q9UJW7 825 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 RAD54BQ9Y620 910 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 RIMBP3CA6NJZ7 1639 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 RIMBP3BA6NNM3 1639 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 RIMBP3Q9UFD9 1639 aa10.69□□□□□ -0.7
CCDC88A-202ENST00000336838 KATNA1O75449 491 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 PROSCO94903 275 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 VCPP55072 806 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 OSTNP61366 133 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 LLGL1Q15334 1064 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 TIGD7Q6NT04 549 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 TEKT4Q8WW24 435 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 FAM217BQ9NTX9 383 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 FAM32AQ9Y421 112 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 DTNAQ9Y4J8 743 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 N4BP2Q86UW6 1770 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 PIK3C2AO00443 1686 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 TLR2O60603 784 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 SLC25A27O95847 323 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 CLPTM1O96005 669 aa10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 RPS12P25398 132 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 TARSP26639 723 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-202ENST00000336838 C4orf50Q6ZRC1 276 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms