RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 IRF6O14896 467 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 EDF1O60869 148 aaKnown RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 BAG2O95816 211 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 RBP3P10745 1247 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 C1QBPQ07021 282 aaKnown RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 GALNTL6Q49A17 601 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 XKR3Q5GH77 459 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 OTOAQ7RTW8 1153 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 FAM13CQ8NE31 585 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 STOML1Q9UBI4 398 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 MARCOQ9UEW3 520 aaPredicted RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 ATRNL1Q5VV63 1379 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 IQANK1A0A1B0GTG1 560 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 NDC80O14777 642 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 CALB2P22676 271 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 PTGER2P43116 358 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 EIF3EP60228 445 aaKnown RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 MYL6P60660 151 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 PIGHQ14442 188 aaPredicted RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 ZNF699Q32M78 642 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 TXNRD3NBQ6F5E7 133 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 TTC8Q8TAM2 541 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 L3MBTL3Q96JM7 780 aaPredicted RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 CDHR1Q96JP9 859 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 ZNF570Q96NI8 536 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 FAM49AQ9H0Q0 323 aaPredicted RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 SLC38A10Q9HBR0 1119 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 AKT3Q9Y243 479 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 HEY1Q9Y5J3 304 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 COL5A3P25940 1745 aaPredicted RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 ZWINTO95229 277 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 OSBPP22059 807 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 TMPRSS15P98073 1019 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 PSMD6Q15008 389 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 TNFAIP8L3Q5GJ75 292 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 PCGF5Q86SE9 256 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 LRRC6Q86X45 466 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 ALLCQ8N6M5 410 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 STK32AQ8WU08 396 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 DNAJC9Q8WXX5 260 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 FAF2Q96CS3 445 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 APOBEC3GQ9HC16 384 aaKnown RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 PPARGC1AQ9UBK2 798 aaKnown RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 ZNF536O15090 1300 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 NRAPQ86VF7 1730 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 NHSQ6T4R5 1651 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 COPEO14579 308 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 PMM2O15305 246 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 TP73O15350 636 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 CCDC22O60826 627 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 OAS1P00973 400 aaKnown RBP11.02□□□□□ -0.64
COL3A1-202ENST00000317840 MYCP01106 439 aaPredicted RBP11.02□□□□□ -0.64
COL3A1-202ENST00000317840 YARSP54577 528 aaKnown RBP11.02□□□□□ -0.64
COL3A1-202ENST00000317840 PTK7Q13308 1070 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 SMAD1Q15797 465 aaKnown RBP11.02□□□□□ -0.64
COL3A1-202ENST00000317840 FKBP1CQ5VVH2 108 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 BSPRYQ5W0U4 402 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 PPP1R2P3Q6NXS1 205 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 CASC4Q6P4E1 433 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 TRIM50Q86XT4 487 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 PPIL6Q8IXY8 311 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 ARMC2Q8NEN0 867 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 SPATA18Q8TC71 538 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 CYTH2Q99418 400 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 DDX56Q9NY93 547 aaKnown RBP11.02□□□□□ -0.64
COL3A1-202ENST00000317840 SHOC2Q9UQ13 582 aa11.02□□□□□ -0.64
COL3A1-202ENST00000317840 KAT6AQ92794 2004 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 TNNC2P02585 160 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 CYP1A1P04798 512 aaPredicted RBP11.02□□□□□ -0.65
COL3A1-202ENST00000317840 KRT7P08729 469 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 ABHD2P08910 425 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 CYP2C8P10632 490 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 GLRA2P23416 452 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 KLF1Q13351 362 aaPredicted RBP11.02□□□□□ -0.65
COL3A1-202ENST00000317840 KRT81Q14533 505 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 CGB2Q6NT52 195 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 ANKS1BQ7Z6G8 1248 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 SAMD3Q8N6K7 520 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 VCPIP1Q96JH7 1222 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 VCXQ9H320 206 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 PCDH9Q9HC56 1237 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 CISHQ9NSE2 258 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 SPATS2LQ9NUQ6 558 aaKnown RBP11.02□□□□□ -0.65
COL3A1-202ENST00000317840 NKX1-2Q9UD57 310 aaPredicted RBP11.02□□□□□ -0.65
COL3A1-202ENST00000317840 TCEA3O75764 348 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 SERPINB3P29508 390 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 SKIV2L2P42285 1042 aaKnown RBP11.02□□□□□ -0.65
COL3A1-202ENST00000317840 GCLCP48506 637 aaPredicted RBP11.02□□□□□ -0.65
COL3A1-202ENST00000317840 GAD2Q05329 585 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 MCL1Q07820 350 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 TMEM132BQ14DG7 1078 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 RCN1Q15293 331 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 FAXCQ5TGI0 409 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 PLEKHA7Q6IQ23 1121 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 ARHGAP24Q8N264 748 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 TTC13Q8NBP0 860 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 FAM161BQ96MY7 647 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 XPNPEP1Q9NQW7 623 aa11.02□□□□□ -0.65
COL3A1-202ENST00000317840 SLC24A2Q9UI40 661 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms