RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 TACC1O75410 805 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 TRIM49P0CI25 452 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 TRIM49CP0CI26 452 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 PSMC3P17980 439 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 CD72P21854 359 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 GDI1P31150 447 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 ATICP31939 592 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 AP3M2P53677 418 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 STARD6P59095 220 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 RPL10AP62906 217 aaKnown RBP17.43■□□□□ 0.38
LSM1-201ENST00000311351 CFAP221Q4G0U5 840 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 ZCWPW2Q504Y3 356 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 ARHGAP15Q53QZ3 475 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 MDH1BQ5I0G3 518 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 ARID3BQ8IVW6 561 aaPredicted RBP17.43■□□□□ 0.38
LSM1-201ENST00000311351 SCN4BQ8IWT1 228 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 PJA1Q8NG27 643 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 OR6B3Q8NGW1 331 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 TMC2Q8TDI7 906 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 DEPDC1BQ8WUY9 529 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 TRMT61BQ9BVS5 477 aaKnown RBP17.43■□□□□ 0.38
LSM1-201ENST00000311351 SMG9Q9H0W8 520 aaKnown RBP17.43■□□□□ 0.38
LSM1-201ENST00000311351 SNX25Q9H3E2 840 aa17.43■□□□□ 0.38
LSM1-201ENST00000311351 PATJQ8NI35 1801 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 SLC38A8A6NNN8 435 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 TADA3O75528 432 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 CSH1P0DML2 217 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 CSH2P0DML3 217 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 GNL1P36915 607 aaPredicted RBP17.42■□□□□ 0.38
LSM1-201ENST00000311351 NUBP1P53384 320 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 NLRP12P59046 1061 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 CYP27A1Q02318 531 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 PRKCQQ04759 706 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 NFIL3Q16649 462 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 ZACNQ401N2 412 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 C4orf50Q6ZRC1 276 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 DTWD2Q8NBA8 298 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 DNASE1L2Q92874 299 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 EEF2KMTQ96G04 330 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 PCED1BQ96HM7 432 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 FUBP3Q96I24 572 aaKnown RBP eCLIP17.42■□□□□ 0.38
LSM1-201ENST00000311351 SHDQ96IW2 340 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 DDX23Q9BUQ8 820 aaKnown RBP17.42■□□□□ 0.38
LSM1-201ENST00000311351 SDCBP2Q9H190 292 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 TASP1Q9H6P5 420 aa17.42■□□□□ 0.38
LSM1-201ENST00000311351 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.42■□□□□ 0.38
LSM1-201ENST00000311351 MAGEC2Q9UBF1 373 aaPredicted RBP17.42■□□□□ 0.38
LSM1-201ENST00000311351 KANSL1LA0AUZ9 987 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 SHISA7A6NL88 538 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 A8MXQ7 604 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 NOL4O94818 638 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 F11P03951 625 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 GLULP15104 373 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 BDNFP23560 247 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 PIK3CAP42336 1068 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 MAGEA11P43364 429 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 VAMP7P51809 220 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 CDH8P55286 799 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 UBXN2BQ14CS0 331 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 ZNF667Q5HYK9 610 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 SPOPLQ6IQ16 392 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 SV2AQ7L0J3 742 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 MFSD6LQ8IWD5 586 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 FAM186BQ8IYM0 893 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 MYCBPAPQ8TBZ2 947 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 LRRC3BQ96PB8 259 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 SLC46A2Q9BY10 475 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 MMRN2Q9H8L6 949 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 VRTNQ9H8Y1 702 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 LTB4R2Q9NPC1 389 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 RMND1Q9NWS8 449 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 DLGAP2Q9P1A6 1054 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 SIT1Q9Y3P8 196 aa17.41■□□□□ 0.38
LSM1-201ENST00000311351 MTF2Q9Y483 593 aaPredicted RBP17.41■□□□□ 0.38
LSM1-201ENST00000311351 CACNA1IQ9P0X4 2223 aa17.4■□□□□ 0.38
LSM1-201ENST00000311351 ZNF263O14978 683 aa17.4■□□□□ 0.38
LSM1-201ENST00000311351 MAPK13O15264 365 aa17.4■□□□□ 0.38
LSM1-201ENST00000311351 GADD45BO75293 160 aaPredicted RBP17.4■□□□□ 0.38
LSM1-201ENST00000311351 HLA-DRAP01903 254 aa17.4■□□□□ 0.38
LSM1-201ENST00000311351 PRCPP42785 496 aa17.4■□□□□ 0.38
LSM1-201ENST00000311351 PPP3CAQ08209 521 aa17.4■□□□□ 0.38
LSM1-201ENST00000311351 MAPRE1Q15691 268 aaKnown RBP17.4■□□□□ 0.38
LSM1-201ENST00000311351 ALYREFQ86V81 257 aaKnown RBP17.4■□□□□ 0.38
LSM1-201ENST00000311351 ATOH1Q92858 354 aaPredicted RBP17.4■□□□□ 0.38
LSM1-201ENST00000311351 E2F7Q96AV8 911 aa17.4■□□□□ 0.38
LSM1-201ENST00000311351 ZNF518BQ9C0D4 1074 aa17.4■□□□□ 0.38
LSM1-201ENST00000311351 TMEM30AQ9NV96 361 aa17.4■□□□□ 0.38
LSM1-201ENST00000311351 PCDHA5Q9Y5H7 936 aa17.4■□□□□ 0.38
LSM1-201ENST00000311351 HELZP42694 1942 aaKnown RBP17.4■□□□□ 0.38
LSM1-201ENST00000311351 ARNTLO00327 626 aa17.39■□□□□ 0.37
LSM1-201ENST00000311351 CLDN5O00501 218 aa17.39■□□□□ 0.37
LSM1-201ENST00000311351 DPYSL4O14531 572 aa17.39■□□□□ 0.37
LSM1-201ENST00000311351 KRT13P13646 458 aa17.39■□□□□ 0.37
LSM1-201ENST00000311351 PTPN1P18031 435 aaKnown RBP17.39■□□□□ 0.37
LSM1-201ENST00000311351 RPL13P26373 211 aaKnown RBP17.39■□□□□ 0.37
LSM1-201ENST00000311351 TARSP26639 723 aaKnown RBP17.39■□□□□ 0.37
LSM1-201ENST00000311351 PSMC2P35998 433 aaKnown RBP17.39■□□□□ 0.37
LSM1-201ENST00000311351 GCLMP48507 274 aa17.39■□□□□ 0.37
LSM1-201ENST00000311351 CACNA2D1P54289 1103 aa17.39■□□□□ 0.37
LSM1-201ENST00000311351 FCHO2Q0JRZ9 810 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms