RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 WDR36Q8NI36 951 aaKnown RBP14.4□□□□□ -0.1
CSPG4-201ENST00000308508 SYN2Q92777 582 aaPredicted RBP14.4□□□□□ -0.1
CSPG4-201ENST00000308508 VWA5AO00534 786 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 BIRC5O15392 142 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 CHI3L1P36222 383 aaPredicted RBP14.4□□□□□ -0.1
CSPG4-201ENST00000308508 ATP12AP54707 1039 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 PRKCQQ04759 706 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 USPL1Q5W0Q7 1092 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 SEL1L3Q68CR1 1132 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 FAM111AQ96PZ2 611 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 E9PBE3 544 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 ATP6V1B2P21281 511 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 NAPEPLDQ6IQ20 393 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 SWSAP1Q6NVH7 229 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 ZNF677Q86XU0 584 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 TBC1D10CQ8IV04 446 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 RERGLQ9H628 205 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 RGS18Q9NS28 235 aa14.4□□□□□ -0.1
CSPG4-201ENST00000308508 SLCO1B7G3V0H7 640 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 DCTN2Q13561 401 aaKnown RBP14.39□□□□□ -0.11
CSPG4-201ENST00000308508 AATKQ6ZMQ8 1374 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 COILP38432 576 aaPredicted RBP14.39□□□□□ -0.11
CSPG4-201ENST00000308508 ITGA1P56199 1179 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 RPS7P62081 194 aaKnown RBP14.39□□□□□ -0.11
CSPG4-201ENST00000308508 ARHGEF7Q14155 803 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 EFHC1Q5JVL4 640 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 UNC45BQ8IWX7 931 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 CYP4Z2PQ8N1L4 340 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 PIGUQ9H490 435 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 SEC31BQ9NQW1 1179 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 WDR62O43379 1518 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 ERVV-1B6SEH8 477 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 ASMTLO95671 621 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 DGUOKQ16854 277 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.39□□□□□ -0.11
CSPG4-201ENST00000308508 C11orf74Q86VG3 221 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 CELF4Q9BZC1 486 aaKnown RBP14.39□□□□□ -0.11
CSPG4-201ENST00000308508 HMG20AQ9NP66 347 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 KIAA0556O60303 1618 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 E2F8A0AVK6 867 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 IFNA14P01570 189 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 PTPN4P29074 926 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 FDFT1P37268 417 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 PPP2R3CQ969Q6 453 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 C7orf25Q9BPX7 421 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 PACSIN1Q9BY11 444 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 PAIP1Q9H074 479 aaKnown RBP14.39□□□□□ -0.11
CSPG4-201ENST00000308508 DBNDD1Q9H9R9 158 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 BSDC1Q9NW68 430 aaPredicted RBP14.39□□□□□ -0.11
CSPG4-201ENST00000308508 KCND2Q9NZV8 630 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 WHRNQ9P202 907 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 TRIM10Q9UDY6 481 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 ATP7AQ04656 1500 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 TRIM49D1C9J1S8 452 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 CSE1LP55060 971 aaKnown RBP14.39□□□□□ -0.11
CSPG4-201ENST00000308508 RCSD1Q6JBY9 416 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 STKLD1Q8NE28 680 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 ADGRL2O95490 1459 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 TM9SF1O15321 606 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 GH2P01242 217 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 YWHABP31946 246 aaKnown RBP14.39□□□□□ -0.11
CSPG4-201ENST00000308508 CCT3P49368 545 aaKnown RBP14.39□□□□□ -0.11
CSPG4-201ENST00000308508 PCSK7Q16549 785 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 CLEC16AQ2KHT3 1053 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 ERFEQ4G0M1 354 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 WDR93Q6P2C0 686 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 UBASH3BQ8TF42 649 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 ORAI2Q96SN7 254 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 KIFC1Q9BW19 673 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 YIPF2Q9BWQ6 316 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 APOL5Q9BWW9 433 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 UBXN6Q9BZV1 441 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 AGPAT5Q9NUQ2 364 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 ENOPH1Q9UHY7 261 aa14.39□□□□□ -0.11
CSPG4-201ENST00000308508 FYNP06241 537 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 COMTP21964 271 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 RASA2Q15283 850 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 LRRC6Q86X45 466 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 SPATA2LQ8IUW3 424 aaPredicted RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 SH3RF3Q8TEJ3 882 aaPredicted RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 TRIM9Q9C026 710 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 RABGEF1Q9UJ41 708 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 PRR23AA6NEV1 266 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 ADARP55265 1226 aaKnown RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 TSNQ15631 228 aaKnown RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 PPIDQ08752 370 aaKnown RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 ARHGAP27Q6ZUM4 889 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 SMAD5Q99717 465 aaKnown RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 BDH2Q9BUT1 245 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 CCSER1Q9C0I3 900 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 NOL6Q9H6R4 1146 aaKnown RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 POLD4Q9HCU8 107 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 CD209Q9NNX6 404 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 TMA7Q9Y2S6 64 aaKnown RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 DENND1BQ6P3S1 775 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 TTC37Q6PGP7 1564 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 TFB1MQ8WVM0 346 aaKnown RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.38□□□□□ -0.11
CSPG4-201ENST00000308508 COMMD8Q9NX08 183 aa14.38□□□□□ -0.11
CSPG4-201ENST00000308508 ALDH1A1P00352 501 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms